(Q21090155)

https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.0020220

8 August 2022

Debashish Bhattacharya

5

Debashish

Bhattacharya

Debashish Bhattacharya

1 reference

8 August 2022

Erika Barbero

2

Erika

Barbero

1 reference

8 August 2022

language of work or name

English

0 references

publication date

December 2006

0 references

full work available at URL

https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.0020220

0 references

published in

PLOS Genetics

0 references

volume

2

0 references

issue

12

0 references

page(s)

e220

0 references

copyright license

Creative Commons Attribution 4.0 International

start time

1 January 2006

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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The phagotrophic origin of eukaryotes and phylogenetic classification of Protozoa

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SSU rRNA-based phylogenetic position of the genera Amoeba and Chaos (Lobosea, Gymnamoebia): the origin of gymnamoebae revisited

19 March 2017

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Evidence from beta-tubulin phylogeny that microsporidia evolved from within the fungi

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A revised six-kingdom system of life

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New Concepts of Kingdoms of Organisms

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Early-branching or fast-evolving eukaryotes? An answer based on slowly evolving positions

19 March 2017

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Bayesian inference of phylogeny and its impact on evolutionary biology

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7 April 2017

The tree of eukaryotes

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The deep roots of eukaryotes

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12 September 2017

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12 September 2017

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18S ribosomal RNA gene sequences of Cochliopodium (Himatismenida) and the phylogeny of Amoebozoa.

12 September 2017

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The protistan origins of animals and fungi

12 September 2017

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A new scenario of plastid evolution: plastid primary endosymbiosis before the divergence of the "Plantae," emended

12 September 2017

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Manifestations of multicellularity: Dictyostelium reports in.

12 September 2017

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Reevaluation of the evolutionary position of opalinids based on 18S rDNA, and alpha- and beta-tubulin gene phylogenies

12 September 2017

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Chlorophyll c-containing plastid relationships based on analyses of a multigene data set with all four chromalveolate lineages

12 September 2017

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Lateral gene transfer in eukaryotes

12 September 2017

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On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes

12 September 2017

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Comparative analysis of the complete plastid genome sequence of the red alga Gracilaria tenuistipitata var. liui provides insights into the evolution of rhodoplasts and their relationship to other plastids

12 September 2017

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The unicellular ancestry of animal development

12 September 2017

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Phylogenetic position of Protoopalina intestinalis based on SSU rRNA gene sequence

12 September 2017

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Evolution: red algal genome affirms a common origin of all plastids

12 September 2017

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Small-subunit ribosomal RNA gene sequences of Phaeodarea challenge the monophyly of Haeckel's Radiolaria

12 September 2017

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A first glimpse into the pattern and scale of gene transfer in Apicomplexa

12 September 2017

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Cytoskeletal organization, phylogenetic affinities and systematics in the contentious taxon Excavata (Eukaryota).

12 September 2017

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The excavate protozoan phyla Metamonada Grassé emend. (Anaeromonadea, Parabasalia, Carpediemonas, Eopharyngia) and Loukozoa emend. (Jakobea, Malawimonas): their evolutionary affinities and new higher taxa

12 September 2017

1 reference

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Hydrogenosomes, mitochondria and early eukaryotic evolution.

12 September 2017

1 reference

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Entamoeba histolytica: an update.

12 September 2017

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Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids

12 September 2017

1 reference

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Molecular phylogeny of three oxymonad genera: Pyrsonympha, Dinenympha and Oxymonas.

12 September 2017

1 reference

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Phylogeny of Choanozoa, Apusozoa, and Other Protozoa and Early Eukaryote Megaevolution

12 September 2017

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The single, ancient origin of chromist plastids

12 September 2017

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Lateral gene transfers and the evolution of eukaryotes: theories and data

12 September 2017

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Evolutionary history of "early-diverging" eukaryotes: the excavate taxon Carpediemonas is a close relative of Giardia.

12 September 2017

1 reference

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Ancient phylogenetic relationships

12 September 2017

1 reference

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Retortamonad flagellates are closely related to diplomonads--implications for the history of mitochondrial function in eukaryote evolution

12 September 2017

1 reference

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Morphological and ecological complexity in early eukaryotic ecosystems

12 September 2017

1 reference

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Are red algae plants? A critical evaluation of three key molecular data sets

12 September 2017

1 reference

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The nucleariid amoebae: more protists at the animal-fungal boundary

12 September 2017

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Oxymonads are closely related to the excavate taxon Trimastix.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1713255

Microsporidia: accumulating molecular evidence that a group of amitochondriate and suspectedly primitive eukaryotes are just curious fungi

12 September 2017

1 reference

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Symbiomonas scintillans gen. et sp. nov. and Picophagus flagellatus gen. et sp. nov. (Heterokonta): two new heterotrophic flagellates of picoplanktonic size

12 September 2017

1 reference

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The Diversity of Eukaryotes

12 September 2017

1 reference

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The phylogenetic position of alpha- and beta-tubulins from the Chlorarachnion host and Cercomonas (Cercozoa).

12 September 2017

1 reference

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Bootstrap confidence levels for phylogenetic trees

12 September 2017

1 reference

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Monophyletic origins of the metazoa: an evolutionary link with fungi

12 September 2017

1 reference

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Comparisons of nuclear-encoded small-subunit ribosomal RNAs reveal the evolutionary position of the Glaucocystophyta

12 September 2017

1 reference

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Molecular evolutionary analyses of nuclear-encoded small subunit ribosomal RNA identify an independent rhizopod lineage containing the Euglyphina and the Chlorarachniophyta

12 September 2017

1 reference

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Sampling properties of DNA sequence data in phylogenetic analysis

12 September 2017

1 reference

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Methods of systematic analysis: the relative superiority of phylogenetic systematics

12 September 2017

1 reference

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Early evolution and the origin of eukaryotes

12 September 2017

1 reference

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Chimeric plastid proteome in the Florida "red tide" dinoflagellate Karenia brevis

12 September 2017

1 reference

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Revised small subunit rRNA analysis provides further evidence that Foraminifera are related to Cercozoa

27 September 2017

1 reference

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Is sparse taxon sampling a problem for phylogenetic inference?

30 May 2018

1 reference

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Reconstructing Early Events in Eukaryotic Evolution

30 May 2018

1 reference

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The Tangled Web: Gene Genealogies and the Origin of Eukaryotes

30 May 2018

1 reference

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Ultrastructure as a Control for Protistan Molecular Phylogeny

30 May 2018

1 reference

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Tracing the Thread of Plastid Diversity through the Tapestry of Life.

30 May 2018

1 reference

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Single, ancient origin of a plastid metabolite translocator family in Plantae from an endomembrane-derived ancestor

19 June 2018

1 reference

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The complete plastid genome sequence of the haptophyte Emiliania huxleyi: a comparison to other plastid genomes.

29 November 2018

1 reference

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Life-history evolution and the origin of multicellularity.

29 November 2018

1 reference

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Inference of the phylogenetic position of oxymonads based on nine genes: support for metamonada and excavata.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1713255

Monophyly of primary photosynthetic eukaryotes: green plants, red algae, and glaucophytes.

29 November 2018

1 reference

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The systematic component of phylogenetic error as a function of taxonomic sampling under parsimony

29 November 2018

1 reference

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Polytomies and Bayesian phylogenetic inference

29 November 2018

1 reference

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Tertiary endosymbiosis driven genome evolution in dinoflagellate algae

29 November 2018

1 reference

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More Genes or More Taxa? The Relative Contribution of Gene Number and Taxon Number to Phylogenetic Accuracy

29 November 2018

1 reference

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Molecular phylogeny of the Haplosporidia based on two independent gene sequences

29 November 2018

1 reference

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Phylogenetic artifacts can be caused by leucine, serine, and arginine codon usage heterogeneity: dinoflagellate plastid origins as a case study

29 November 2018

1 reference

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Identity of the mtDNA haplotype(s) of Phytophthora infestans in historical specimens from the Irish potato famine

29 November 2018

1 reference

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Actin and ubiquitin protein sequences support a cercozoan/foraminiferan ancestry for the plasmodiophorid plant pathogens.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1713255

Covarion shifts cause a long-branch attraction artifact that unites microsporidia and archaebacteria in EF-1alpha phylogenies.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1713255

Phylogenetic analysis of eukaryotes using heat-shock protein Hsp90.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1713255

Foraminifera and Cercozoa share a common origin according to RNA polymerase II phylogenies

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1713255

Origin and phylogeny of chloroplasts revealed by a simple correlation analysis of complete genomes.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1713255

Phylogeny of lobose amoebae based on actin and small-subunit ribosomal RNA genes

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1713255

A Novel Polyubiquitin Structure in Cercozoa and Foraminifera: Evidence for a New Eukaryotic Supergroup

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1713255

Testing for differences in rates-across-sites distributions in phylogenetic subtrees.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1713255

Mathematical elegance with biochemical realism: the covarion model of molecular evolution

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1713255

Foraminifera and Cercozoa are related in actin phylogeny: two orphans find a home?

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1713255

Phylogeny of eukaryotes based on ribosomal RNA: long-branch attraction and models of sequence evolution.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1713255

The origin of red algae and the evolution of chloroplasts.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1713255

The rooting of the universal tree of life is not reliable

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1713255

Single gene circles in dinoflagellate chloroplast genomes.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1713255

The actin gene of the glaucocystophyte Cyanophora paradoxa: analysis of the coding region and introns, and an actin phylogeny of eukaryotes.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1713255

Taxonomic sampling, phylogenetic accuracy, and investigator bias

29 November 2018

1 reference

12 December 2020

A plastid in the making: evidence for a second primary endosymbiosis

1 reference

12 December 2020

Are Ichthyosporea animals or fungi? Bayesian phylogenetic analysis of elongation factor 1α of Ichthyophonus irregularis

1 reference

12 December 2020

Minimal plastid genome evolution in the Paulinella endosymbiont

1 reference

12 December 2020

10.1371/JOURNAL.PGEN.0020220

Identifiers

DOI

1 reference

1318687

1318687

1 reference

1 reference

1 reference