(Q22066341)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18048330%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

title

Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18048330%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

0 references

4

Henry Daniell

Henry

Daniell

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18048330%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

13

Rhiannon Peery

Rhiannon

Peery

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18048330%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

5

Claude W Depamphilis

Claude W

Depamphilis

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18048330%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

1

Robert K

Jansen

Robert K Jansen

1 reference

28 December 2019

Zhengqiu Cai

2

Zhengqiu

Cai

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18048330%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

Linda A Raubeson

3

Linda A

Raubeson

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18048330%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

Kai F Müller

7

Kai F

Müller

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18048330%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

Mary Guisinger-Bellian

8

Mary

Guisinger-Bellian

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18048330%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

Rosemarie C Haberle

9

Rosemarie C

Haberle

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18048330%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

Anne K Hansen

10

Anne K

Hansen

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18048330%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

Timothy W Chumley

11

Timothy W

Chumley

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18048330%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

Seung-Bum Lee

12

Seung-Bum

Lee

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18048330%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

Joel R McNeal

14

Joel R

McNeal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18048330%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

Jennifer V Kuehl

15

Jennifer V

Kuehl

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18048330%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

Jeffrey L Boore

16

Jeffrey L

Boore

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18048330%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

James Leebens-Mack

6

James

Leebens-Mack

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18048330%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

language of work or name

English

0 references

publication date

28 November 2007

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18048330%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

number of pages

6

1 reference

Proceedings of the National Academy of Sciences of the United States of America

inferred from page(s)

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18048330%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

volume

104

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18048330%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

issue

49

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18048330%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

page(s)

19369-19374

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18048330%20AND%20SRC:MED&resulttype=core&format=json

Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms

28 December 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

Complete plastid genome sequences of Drimys, Liriodendron, and Piper: implications for the phylogenetic relationships of magnoliids

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

The complete chloroplast genome sequence of Gossypium hirsutum: organization and phylogenetic relationships to other angiosperms

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

Floral gene resources from basal angiosperms for comparative genomics research

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots?

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

Phylogenetic and evolutionary implications of complete chloroplast genome sequences of four early-diverging angiosperms: Buxus (Buxaceae), Chloranthus (Chloranthaceae), Dioscorea (Dioscoreaceae), and Illicium (Schisandraceae)

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

Chloroplast Genome (cpDNA) of Cycas taitungensis and 56 cp Protein-Coding Genes of Gnetum parvifolium: Insights into cpDNA Evolution and Phylogeny of Extant Seed Plants

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

The Complete Chloroplast Genome Sequence of Pelargonium x hortorum: Organization and Evolution of the Largest and Most Highly Rearranged Chloroplast Genome of Land Plants

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

The Chloroplast Genome of Phalaenopsis aphrodite (Orchidaceae): Comparative Analysis of Evolutionary Rate with that of Grasses and Its Phylogenetic Implications

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

Identifying the Basal Angiosperm Node in Chloroplast Genome Phylogenies: Sampling One's Way Out of the Felsenstein Zone

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

The Chloroplast Genome of Nymphaea alba: Whole-Genome Analyses and the Problem of Identifying the Most Basal Angiosperm

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

MRBAYES: Bayesian inference of phylogenetic trees

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

MODELTEST: testing the model of DNA substitution

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

Hydatellaceae identified as a new branch near the base of the angiosperm phylogenetic tree

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

Independent and combined analyses of sequences from all three genomic compartments converge on the root of flowering plant phylogeny

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

Cretaceous angiosperm flowers: Innovation and evolution in plant reproduction

19 March 2017

1 reference

https://api.crossref.org/works/10.1073/PNAS.0709121104

Automatic annotation of organellar genomes with DOGMA

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

An approximately unbiased test of phylogenetic tree selection

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

CONSEL: for assessing the confidence of phylogenetic tree selection

7 April 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

7 April 2017

https://api.crossref.org/works/10.1073%2FPNAS.0709121104

Gaps as characters in sequence-based phylogenetic analyses

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

Amborella not a "basal angiosperm"? Not so fast

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

Using partial genomic fosmid libraries for sequencing complete organellar genomes.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

SeqState: primer design and sequence statistics for phylogenetic DNA datasets

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

Chloroplast genome phylogenetics: why we need independent approaches to plant molecular evolution

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

Genome-scale data, angiosperm relationships, and "ending incongruence": a cautionary tale in phylogenetics

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

PRAP-computation of Bremer support for large data sets

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

Punctuated evolution of mitochondrial gene content: high and variable rates of mitochondrial gene loss and transfer to the nucleus during angiosperm evolution

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

The root of the angiosperms revisited

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

Plastome mutator-induced alterations arise in Oenothera chloroplast DNA through template slippage

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

Transfer of rpl22 to the nucleus greatly preceded its loss from the chloroplast and involved the gain of an intron.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

A new test of phylogenetic model fitness addresses the issue of the basal angiosperm phylogeny

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

The relationship between the rate of molecular evolution and the rate of genome rearrangement in animal mitochondrial genomes

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

Incorporating information from length-mutational events into phylogenetic analysis.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

Analysis of the Amborella trichopoda chloroplast genome sequence suggests that amborella is not a basal angiosperm.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

Characterization of primary lesions caused by the plastome mutator of Oenothera.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

Mutations at the Arabidopsis CHM locus promote rearrangements of the mitochondrial genome

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2148296

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II

30 May 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0709121104

Reconstructing the Basal Angiosperm Phylogeny: Evaluating Information Content of Mitochondrial Genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0709121104

A 567‐Taxon Data Set for Angiosperms: The Challenges Posed by Bayesian Analyses of Large Data Sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0709121104

Phylogenetic Analyses of Basal Angiosperms Based on Nine Plastid, Mitochondrial, and Nuclear Genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0709121104

Analysis of Acorus calamus chloroplast genome and its phylogenetic implications.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0709121104

Cases in which Parsimony or Compatibility Methods will be Positively Misleading

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0709121104

Floral evidence for Cretaceous chloranthoid angiosperms

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0709121104

Phylogenetics of Seed Plants: An Analysis of Nucleotide Sequences from the Plastid Gene rbcL

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0709121104

Phylogeny of the Eudicots: A Nearly Complete Familial Analysis Based on rbcL Gene Sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0709121104

Angiosperm phylogeny based on matK sequence information

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0709121104

Phylogenetics of flowering plants based on combined analysis of plastid atpB and rbcL gene sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0709121104

Many Parallel Losses of infA from Chloroplast DNA during Angiosperm Evolution with Multiple Independent Transfers to the Nucleus

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0709121104

Parallel Loss of a Slowly Evolving Intron from Two Closely Related Families in Asparagales

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0709121104

Methods for obtaining and analyzing whole chloroplast genome sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0709121104

Confidence Limits on Phylogenies: an Approach using the Bootstrap

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0709121104

Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms

21 January 2018

1 reference

12 December 2020

Rates of Gene Rearrangement and Nucleotide Substitution Are Correlated in the Mitochondrial Genomes of Insects

1 reference

12 December 2020

The place of Amborella within the radiation of angiosperms

1 reference

12 December 2020

SIX INDEPENDENT LOSSES OF THE CHLOROPLAST DNA rpl2 INTRON IN DICOTYLEDONS: MOLECULAR AND PHYLOGENETIC IMPLICATIONS.

1 reference

12 December 2020

Multiple Independent Losses of the rpoC1 Intron in Angiosperm Chloroplast DNA's

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0709121104

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1073/PNAS.0709121104

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18048330%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

ADS bibcode

2007PNAS..10419369J

0 references

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18048330%20AND%20SRC:MED&resulttype=core&format=json

28 December 2019

2 references