(Q28708852)

Geospiza magnirostris

1 reference

19

0 references

Jonathan A. Eisen

17

Jonathan A Eisen

0 references

Richard Emes

7

Richard D Emes

0 references

Michael B. Eisen

11

Michael B Eisen

0 references

Michael Brent Hawkins

Michael Brent Hawkins

10

0 references

Lesheng Kong

Lesheng Kong

4

0 references

Andreas Heger

Andreas Heger

8

0 references

Matthew T Webster

Matthew T Webster

5

0 references

Aaron Earl Darling

Aaron Darling

2

0 references

Matthew K. Fujita

3

Matthew Fujita

0 references

author name string

Chris M Rands

1

0 references

Céline Clabaut

6

0 references

Stephen Meader

9

0 references

Clotilde Teiling

12

0 references

Jason Affourtit

13

0 references

Benjamin Boese

14

0 references

Peter R Grant

15

0 references

Barbara Rosemary Grant

16

0 references

Arhat Abzhanov

https://scigraph.springernature.com/pub.10.1186/1471-2164-14-95

18

0 references

language of work or name

English

0 references

publication date

12 February 2013

0 references

published in

BMC Genomics

0 references

volume

14

0 references

issue

1

0 references

page(s)

95

0 references

exact match

0 references

cites work

The genomic landscape of species divergence in Ficedula flycatchers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Dynamic evolution of base composition: causes and consequences in avian phylogenomics

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

The Nebulin family: an actin support group

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Massive turnover of functional sequence in human and other mammalian genomes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Molecular evolution of genes in avian genomes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

17 March 2017

The genome of a songbird

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Darwin's Galapagos finches in modern biology

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Biased gene conversion and the evolution of mammalian genomic landscapes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Nucleotide variation, linkage disequilibrium and founder-facilitated speciation in wild populations of the zebra finch (Taeniopygia guttata)

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

DNAI2 mutations cause primary ciliary dyskinesia with defects in the outer dynein arm

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

PAML 4: phylogenetic analysis by maximum likelihood

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Genome-wide identification of human functional DNA using a neutral indel model

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

The Universal Protein Resource (UniProt): an expanding universe of protein information

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Scoredist: a simple and robust protein sequence distance estimator

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Bmp4 and Morphological Variation of Beaks in Darwin's Finches

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Xanthine oxidoreductase is central to the evolution and function of the innate immune system

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

A novel dynein light intermediate chain colocalizes with the retrograde motor for intraflagellar transport at sites of axoneme assembly in chlamydomonas and Mammalian cells

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

T-Coffee: A novel method for fast and accurate multiple sequence alignment

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Gene ontology: tool for the unification of biology

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

PAML: a program package for phylogenetic analysis by maximum likelihood

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Rates of nucleotide substitution in primates and rodents and the generation-time effect hypothesis

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Bayes empirical bayes inference of amino acid sites under positive selection

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Aligning multiple genomic sequences with the threaded blockset aligner

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

A new generation of homology search tools based on probabilistic inference

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

The rapid evolution of reproductive proteins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

De novo identification of repeat families in large genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

The genomics of speciation-with-gene-flow

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

The mitochondrial transporter ABC-me (ABCB10), a downstream target of GATA-1, is essential for erythropoiesis in vivo

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Identifying single copy orthologs in Metazoa

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Death of PRDM9 coincides with stabilization of the recombination landscape in the dog genome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

The Anolis lizard genome: an amniote genome without isochores

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Two developmental modules establish 3D beak-shape variation in Darwin's finches

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

An alignment confidence score capturing robustness to guide tree uncertainty

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Conspecific versus heterospecific gene exchange between populations of Darwin's finches

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Comparative gene expression analysis of avian embryonic facial structures reveals new candidates for human craniofacial disorders.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

In defense of statistical methods for detecting positive selection

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Reliabilities of identifying positive selection by the branch-site and the site-prediction methods

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Mitogenomic relationships of placental mammals and molecular estimates of their divergences

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

OPTIC: orthologous and paralogous transcripts in clades

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

More genes underwent positive selection in chimpanzee evolution than in human evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Eukaryotic genome size databases

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Phylogenetic reconstruction of orthology, paralogy, and conserved synteny for dog and human

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

The calmodulin pathway and evolution of elongated beak morphology in Darwin's finches

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

DWARF, A NEW MENDELIAN RECESSIVE CHARACTER OF THE HOUSE MOUSE.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Whole genome microarray analysis of growth hormone-induced gene expression in bone: T-box3, a novel transcription factor, regulates osteoblast proliferation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

A molecular timescale for galliform birds accounting for uncertainty in time estimates and heterogeneity of rates of DNA substitutions across lineages and sites

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Comparative landscape genetics and the adaptive radiation of Darwin's finches: the role of peripheral isolation.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Evidence for turnover of functional noncoding DNA in mammalian genome evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Phylogenetic relationships and morphological diversity in Darwin's finches and their relatives

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Identification of five new genes on the Y chromosome of Drosophila melanogaster

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

The turkey transcription factor Pit-1/GHF-1 can activate the turkey prolactin and growth hormone gene promoters in vitro but is not detectable in lactotrophs in vivo

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

On the origin of Darwin's finches

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

Regulation of embryonic growth and lysosomal targeting by the imprinted Igf2/Mpr gene

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

A tissue-specific transcription factor containing a homeodomain specifies a pituitary phenotype

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3575239

The evolution of the avian genome as revealed by comparative molecular cytogenetics.

3 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-95

Deleterious mutations and the evolution of sex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-95

A selection model of molecular evolution incorporating the effective population size

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-95

The Chlamydomonas MBO2 locus encodes a conserved coiled-coil protein important for flagellar waveform conversion

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-95

The difficulty of avoiding false positives in genome scans for natural selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-95

False-positive results obtained from the branch-site test of positive selection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-95

Recurrent patterns of natural selection in a population of Darwin's finches

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-95

Hybridization of bird species

21 January 2018

1 reference

12 December 2020

The effect of insertions, deletions, and alignment errors on the branch-site test of positive selection

1 reference

12 December 2020

Rate of karyotype evolution and speciation in birds

1 reference

12 December 2020

Effects of the Pit1 mutation on the insulin signaling pathway: implications on the longevity of the long-lived Snell dwarf mouse

1 reference

12 December 2020

Statistical properties of the branch-site test of positive selection

1 reference

12 December 2020

Evolutionary Dynamics of a Natural Population. The Large Cactus Finch of the Galapagos. B. Rosemary Grant and Peter R. Grant. University of Chicago Press, Chicago, 1990. xx, 350 pp., illus. $65; paper, $24.95

1 reference

12 December 2020