(Q28742917)

English

What is the phylogenetic signal limit from mitogenomes? The reconciliation between mitochondrial and nuclear data in the Insecta class phylogeny

scientific article (publication date: 27 October 2011)

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scholarly article

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What is the phylogenetic signal limit from mitogenomes? The reconciliation between mitochondrial and nuclear data in the Insecta class phylogeny (English)

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1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

inferred from title

phylogenetic reconciliation

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based on heuristic

inferred from title

mitochondrial DNA

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based on heuristic

inferred from title

author name string

Gerard Talavera

1

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Roger Vila

2

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language of work or name

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publication date

27 October 2011

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BMC Evolutionary Biology

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11

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1

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315

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9-genes reinforce the phylogeny of holometabola and yield alternate views on the phylogenetic placement of Strepsiptera

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

17 March 2017

Ecdysozoan mitogenomics: evidence for a common origin of the legged invertebrates, the Panarthropoda

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

17 March 2017

Single-copy nuclear genes resolve the phylogeny of the holometabolous insects

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

17 March 2017

Phylogenomics revives traditional views on deep animal relationships

1 reference

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17 March 2017

Additional molecular support for the new chordate phylogeny

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

17 March 2017

Improvement of molecular phylogenetic inference and the phylogeny of Bilateria

1 reference

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17 March 2017

Phylogenetic analysis of mitochondrial protein coding genes confirms the reciprocal paraphyly of Hexapoda and Crustacea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

17 March 2017

Site specific rates of mitochondrial genomes and the phylogeny of eutheria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

17 March 2017

Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects

1 reference

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17 March 2017

The rapid divergence of the ecdysone receptor is a synapomorphy for Mecopterida that clarifies the Strepsiptera problem

1 reference

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17 March 2017

Parallel evolution of the genetic code in arthropod mitochondrial genomes.

1 reference

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17 March 2017

Heterotachy and long-branch attraction in phylogenetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

17 March 2017

Mitochondrial genomes suggest that hexapods and crustaceans are mutually paraphyletic

1 reference

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17 March 2017

ProbCons: Probabilistic consistency-based multiple sequence alignment

1 reference

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17 March 2017

MAFFT version 5: improvement in accuracy of multiple sequence alignment

1 reference

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17 March 2017

Multiple origins of parasitism in lice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

17 March 2017

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

1 reference

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17 March 2017

Hexapod origins: monophyletic or paraphyletic?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

17 March 2017

Mammalian mitogenomic relationships and the root of the eutherian tree

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

17 March 2017

The Strepsiptera problem: phylogeny of the holometabolous insect orders inferred from 18S and 28S ribosomal DNA sequences and morphology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

17 March 2017

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

17 March 2017

MRBAYES: Bayesian inference of phylogenetic trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

17 March 2017

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

17 March 2017

Acoel Flatworms: Earliest Extant Bilaterian Metazoans, Not Members of Platyhelminthes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

17 March 2017

An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

17 March 2017

Phylo-evo-devo: combining phylogenetics with evolutionary developmental biology

1 reference

https://api.crossref.org/works/10.1186/1471-2148-11-315

22 April 2017

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

7 April 2017

Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

7 April 2017

A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

7 April 2017

Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

7 April 2017

Acoelomorph flatworms are deuterostomes related to Xenoturbella

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

7 April 2017

Phylogenetic signal in nucleotide data from seed plants: implications for resolving the seed plant tree of life

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

Site-specific time heterogeneity of the substitution process and its impact on phylogenetic inference

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

Ribosomal protein genes of holometabolan insects reject the Halteria, instead revealing a close affinity of Strepsiptera with Coleoptera

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

Phylogenetic analysis of the true water bugs (Insecta: Hemiptera: Heteroptera: Nepomorpha): evidence from mitochondrial genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

A preliminary mitochondrial genome phylogeny of Orthoptera (Insecta) and approaches to maximizing phylogenetic signal found within mitochondrial genome data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

Revealing pancrustacean relationships: phylogenetic analysis of ribosomal protein genes places Collembola (springtails) in a monophyletic Hexapoda and reinforces the discrepancy between mitochondrial and nuclear DNA markers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

Near intron positions are reliable phylogenetic markers: an application to holometabolous insects

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

A site- and time-heterogeneous model of amino acid replacement.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

The K tree score: quantification of differences in the relative branch length and topology of phylogenetic trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

Acoel flatworms are not platyhelminthes: evidence from phylogenomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

Phylogenetic position of Salinibacter ruber based on concatenated protein alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

A Bayesian compound stochastic process for modeling nonstationary and nonhomogeneous sequence evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

The mitochondrial genome of the entomophagous endoparasite Xenos vesparum (Insecta: Strepsiptera).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

Evidence for multiple reversals of asymmetric mutational constraints during the evolution of the mitochondrial genome of metazoa, and consequences for phylogenetic inferences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

The structure of the USP/RXR of Xenos pecki indicates that Strepsiptera are not closely related to Diptera

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

Mitochondrial genomes: anything goes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

Comment on "Hexapod origins: monophyletic or paraphyletic?".

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

The root of the mammalian tree inferred from whole mitochondrial genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

Rapid divergence of the ecdysone receptor in Diptera and Lepidoptera suggests coevolution between ECR and USP-RXR.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

The highly rearranged mitochondrial genome of the plague thrips, Thrips imaginis (Insecta: Thysanoptera): convergence of two novel gene boundaries and an extraordinary arrangement of rRNA genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

Taxon sampling, bioinformatics, and phylogenomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

Systematic bias in phylogenetic analysis: is the Strepsiptera problem solved?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

Long-branch distraction and the Strepsiptera

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

Intron insertion as a phylogenetic character: the engrailed homeobox of Strepsiptera does not indicate affinity with Diptera.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

Archaea sister group of Bacteria? Indications from tree reconstruction artifacts in ancient phylogenies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

Molecular phylogenetics at the Felsenstein zone: approaching the Strepsiptera problem using 5.8S and 28S rDNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

Molecular phylogeny of the Homoptera: a paraphyletic taxon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

3 June 2018

Aligned 18S and insect phylogeny.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-315

21 January 2018

Quantification of insect genome divergence

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-315

21 January 2018

Towards an 18S phylogeny of hexapods: accounting for group-specific character covariance in optimized mixed nucleotide/doublet models.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-315

21 January 2018

Mitochondrial genome organization and phylogeny of two vespid wasps.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-315

21 January 2018

Arachnid relationships based on mitochondrial genomes: asymmetric nucleotide and amino acid bias affects phylogenetic analyses

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-315

21 January 2018

How do insect nuclear and mitochondrial gene substitution patterns differ? Insights from Bayesian analyses of combined datasets.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-315

21 January 2018

Heterogeneity of nucleotide frequencies among evolutionary lineages and phylogenetic inference.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-315

21 January 2018

An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-315

21 January 2018

Four new avian mitochondrial genomes help get to basic evolutionary questions in the late cretaceous

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-315

21 January 2018

Phylogenetic-signal dissection of nuclear housekeeping genes supports the paraphyly of sponges and the monophyly of Eumetazoa.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-315

21 January 2018

The position of the Hymenoptera within the Holometabola as inferred from the mitochondrial genome of Perga condei (Hymenoptera: Symphyta: Pergidae).

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-315

21 January 2018

Multiple origins of parasitism in lice: phylogenetic analysis of SSU rDNA indicates that the Phthiraptera and Psocoptera are not monophyletic.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-315

21 January 2018

Mitogenomics: digging deeper with complete mitochondrial genomes

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-315

21 January 2018

Phylogenetics. Which mammalian supertree to bark up?

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-315

21 January 2018

Empirical profile mixture models for phylogenetic reconstruction

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-315

21 January 2018

Detecting and Overcoming Systematic Errors in Genome-Scale Phylogenies

1 reference

https://api.crossref.org/works/10.1186%2F1471-2148-11-315

21 January 2018

Modelling heterotachy in phylogenetic inference by reversible-jump Markov chain Monte Carlo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

27 November 2018

MtArt: A New Model of Amino Acid Replacement for Arthropoda

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

27 November 2018

Lack of resolution in the animal phylogeny: closely spaced cladogeneses or undetected systematic errors?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

27 November 2018

Contrasting rates of mitochondrial molecular evolution in parasitic Diptera and Hymenoptera.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

27 November 2018

Shared nucleotide composition biases among species and their impact on phylogenetic reconstructions of the Drosophilidae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

27 November 2018

Deducing the pattern of arthropod phytogeny from mitochondrial DNA rearrangements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3213125

27 November 2018

Rates of Gene Rearrangement and Nucleotide Substitution Are Correlated in the Mitochondrial Genomes of Insects

1 reference

https://pubmed.ncbi.nlm.nih.gov/22032248

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Do long branches attract flies?

1 reference

https://pubmed.ncbi.nlm.nih.gov/22032248

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2148-11-315

1 reference

Consolidated OpenCitations Corpus – April 2017

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0 references

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

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