(Q30566044)

24 June 2017

Estimating divergence dates and evaluating dating methods using phylogenomic and mitochondrial data in squamate reptiles (English)

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24 June 2017

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7

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24 June 2017

Travis Moss

3

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Jack W. Sites Jr

6

object named as

Jack W Sites

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Daniel G. Mulcahy

1

object named as

Daniel G Mulcahy

1 reference

24 June 2017

Brice P Noonan

2

1 reference

24 June 2017

Ted M Townsend

4

1 reference

24 June 2017

Tod W Reeder

5

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24 June 2017

language of work or name

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7 September 2012

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Molecular Phylogenetics and Evolution

24 June 2017

18

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based on heuristic

inferred from page(s)

published in

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24 June 2017

65

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24 June 2017

3

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24 June 2017

974-991

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Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence

24 June 2017

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Performance of relaxed-clock methods in estimating evolutionary divergence times and their credibility intervals

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

An Early Eocene gecko from Baltic amber and its implications for the evolution of gecko adhesion

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Paleontological evidence to date the tree of life

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

The Taming of the Skew: Estimating Proper Confidence Intervals for Divergence Dates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Data partitions and complex models in Bayesian analysis: the phylogeny of Gymnophthalmid lizards

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Phylogeny And Systematics Of Squamata (Reptilia) Based On Morphology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Prototeius stageri, Gen. et sp. Nov., a New Teiid Lizard from the Upper Cretaceous Marshalltown Formation of New Jersey, with a Preliminary Phylogenetic Revision of the Teiidae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Rocks and clocks: calibrating the Tree of Life using fossils and molecules

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Prospects for building the tree of life from large sequence databases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

BEAST: Bayesian evolutionary analysis by sampling trees

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Relaxed phylogenetics and dating with confidence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

A comparison of global, gene-specific, and relaxed clock methods in a comparative genomics framework: dating the polyploid history of soybean (Glycine max).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

At the feet of the dinosaurs: the early history and radiation of lizards

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Out of the blue: a novel, trans-Atlantic clade of geckos (Gekkota, Squamata)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Taxonomic Composition and Systematics of Late Cretaceous Lizard Assemblages from Ukhaa Tolgod and Adjacent Localities, Mongolian Gobi Desert

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

MRBAYES: Bayesian inference of phylogenetic trees

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Calibration choice, rate smoothing, and the pattern of tetrapod diversification according to the long nuclear gene RAG-1

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

The impact of the representation of fossil calibrations on Bayesian estimation of species divergence times

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Out of India, thrice: diversification of Asian forest scorpions reveals three colonizations of Southeast Asia

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Can parallel diversification occur in sympatry? Repeated patterns of body-size evolution in coexisting clades of North American salamanders

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

First definitive record of Mesozoic lizards from Madagascar

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Molecular phylogenetics and evolution of turtles

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Mitochondrial genomes from major lizard families suggest their phylogenetic relationships and ancient radiations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Hidden support from unpromising data sets strongly unites snakes with anguimorph 'lizards'.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

A general comparison of relaxed molecular clock models

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Taxon sampling effects in molecular clock dating: an example from the African Restionaceae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Evaluating Trans-Tethys Migration: An Example Using Acrodont Lizard Phylogenetics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Gene Trees in Species Trees

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Notice of new reptiles from the Laramie Formation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

A simple method for bracketing absolute divergence times on molecular phylogenies using multiple fossil calibration points

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Four well-constrained calibration points from the vertebrate fossil record for molecular clock estimates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Assessing the quality of molecular divergence time estimates by fossil calibrations and fossil-based model selection

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Assessing concordance of fossil calibration points in molecular clock studies: an example using turtles.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

A new taxon of helodermatid-like lizard from the Albian–Cenomanian of Utah

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Bayesian phylogenetic analysis of combined data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Phylogenomics of eukaryotes: impact of missing data on large alignments

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Branch-length estimation bias misleads molecular dating for a vertebrate mitochondrial phylogeny

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Inferring speciation times under an episodic molecular clock

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Ancient origin of a Western Mediterranean radiation of subterranean beetles

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Estimating diversification rates from phylogenetic information

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Assessing calibration uncertainty in molecular dating: the assignment of fossils to alternative calibration points

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Amazonian amphibian diversity is primarily derived from late Miocene Andean lineages

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Live birth among Iguanian lizards predates Pliocene--Pleistocene glaciations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Conflicting mitochondrial and nuclear phylogenies for the widely disjunct Emys (Testudines: Emydidae) species complex, and what they tell us about biogeography and hybridization

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

A rapid bootstrap algorithm for the RAxML Web servers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Triassic vertebrates of gondwanan aspect from the richmond basin of virginia

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Divergence time and evolutionary rate estimation with multilocus data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Estimating the rate of evolution of the rate of molecular evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Molecular phylogenetics of squamata: the position of snakes, amphisbaenians, and dibamids, and the root of the squamate tree.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Rapid development of multiple nuclear loci for phylogenetic analysis using genomic resources: An example from squamate reptiles

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Phylogeny of iguanian lizards inferred from 29 nuclear loci, and a comparison of concatenated and species-tree approaches for an ancient, rapid radiation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

The phylogeny of squamate reptiles (lizards, snakes, and amphisbaenians) inferred from nine nuclear protein-coding genes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Timing major conflict between mitochondrial and nuclear genes in species relationships of Polygonia butterflies (Nymphalidae: Nymphalini)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Cryptic crested newt diversity at the Eurasian transition: the mitochondrial DNA phylogeography of Near Eastern Triturus newts

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Missing data, incomplete taxa, and phylogenetic accuracy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Global patterns of diversification and species richness in amphibians

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Missing data in phylogenetic analysis: reconciling results from simulations and empirical data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Hylid frog phylogeny and sampling strategies for speciose clades

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Branch lengths, support, and congruence: testing the phylogenomic approach with 20 nuclear loci in snakes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Combining phylogenomics and fossils in higher-level squamate reptile phylogeny: molecular data change the placement of fossil taxa

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Comparison of Likelihood and Bayesian Methods for Estimating Divergence Times Using Multiple Gene Loci and Calibration Points, with Application to a Radiation of Cute-Looking Mouse Lemur Species

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Estimation of primate speciation dates using local molecular clocks

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

Exploring patterns and extent of bias in estimating divergence time from mitochondrial DNA sequence data in a particular lineage: a case study of salamanders (order Caudata).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.08.018

10.1016/J.YMPEV.2012.08.018

7 January 2021

Identifiers

DOI

1 reference

24 June 2017

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