(Q34316204)

1 August 2017

Relaxed phylogenetics and the palaeoptera problem: resolving deep ancestral splits in the insect phylogeny (English)

1 reference

1 August 2017

1 reference

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3

Andrew Rambaut

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author name string

Jessica A Thomas

series ordinal

1

1 reference

PubMed ID

23220768

1 August 2017

John W H Trueman

series ordinal

2

1 reference

PubMed ID

23220768

1 August 2017

John J Welch

series ordinal

4

1 reference

1 August 2017

5 December 2012

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1 August 2017

1 reference

1 August 2017

62

1 reference

1 August 2017

2

1 reference

1 August 2017

285-297

1 reference

Evidence for a clade of nematodes, arthropods and other moulting animals

1 August 2017

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

The incomplete natural history of mitochondria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Global diversity of mayflies (Ephemeroptera, Insecta) in freshwater

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Lack of resolution in the animal phylogeny: closely spaced cladogeneses or undetected systematic errors?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

A review of long-branch attraction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Gene translocation links insects and crustaceans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Mitochondrial genome data alone are not enough to unambiguously resolve the relationships of Entognatha, Insecta and Crustacea sensu lato (Arthropoda)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs: Correction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Phylogenetic analysis of mitochondrial protein coding genes confirms the reciprocal paraphyly of Hexapoda and Crustacea

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Effects of nucleotide composition bias on the success of the parsimony criterion in phylogenetic inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Phylogenomics and the reconstruction of the tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Comment on "Hexapod origins: monophyletic or paraphyletic?".

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Relaxed phylogenetics and dating with confidence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

BEAST: Bayesian evolutionary analysis by sampling trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

The evolution of insect flight: implications for the evolution of the nervous system

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Evolutionary trees from DNA sequences: A maximum likelihood approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Ribosomal DNA phylogeny of the major extant arthropod classes and the evolution of myriapods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

A Review of Arthropod Phylogeny: New Data Based on Ribosomal DNA Sequences and Direct Character Optimization

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Phylogeny of Arthropoda inferred from mitochondrial sequences: strategies for limiting the misleading effects of multiple changes in pattern and rates of substitution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Evidence for multiple reversals of asymmetric mutational constraints during the evolution of the mitochondrial genome of metazoa, and consequences for phylogenetic inferences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Resolution of phylogenetic conflict in large data sets by increased taxon sampling

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Calibrated tree priors for relaxed phylogenetics and divergence time estimation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Death of an order: a comprehensive molecular phylogenetic study confirms that termites are eusocial cockroaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Phylogenetic relationships among insect orders based on three nuclear protein-coding gene sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Phylogenomics: the beginning of incongruence?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

The effect of model choice on phylogenetic inference using mitochondrial sequence data: lessons from the scorpions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Heterogeneity in regional GC content and differential usage of codons and amino acids in GC-poor and GC-rich regions of the genome of Apis mellifera

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Aligned 18S and insect phylogeny.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Opinions on multiple sequence alignment, and an empirical comparison of repeatability and accuracy between POY and structural alignment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

The effective population size of Anopheles gambiae in Kenya: implications for population structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Polytomies and Bayesian phylogenetic inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

The complete mitochondrial genome and phylogenomics of a damselfly, Euphaea formosa support a basal Odonata within the Pterygota.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

PhyDesign: an online application for profiling phylogenetic informativeness

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Further use of nearly complete 28S and 18S rRNA genes to classify Ecdysozoa: 37 more arthropods and a kinorhynch

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Ecdysozoan phylogeny and Bayesian inference: first use of nearly complete 28S and 18S rRNA gene sequences to classify the arthropods and their kin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Arachnid relationships based on mitochondrial genomes: asymmetric nucleotide and amino acid bias affects phylogenetic analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

A phylogenomic approach to resolve the arthropod tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Effective population size of Anopheles funestus chromosomal forms in Burkina Faso

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

The oldest fossil bee: Apoid history, evolutionary stasis, and antiquity of social behavior

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Towards an 18S phylogeny of hexapods: accounting for group-specific character covariance in optimized mixed nucleotide/doublet models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Hexapod origins: monophyletic or paraphyletic?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

A retroposon analysis of Afrotherian phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Genome-scale phylogeny and the detection of systematic biases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

The root of the mammalian tree inferred from whole mitochondrial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

jModelTest: phylogenetic model averaging

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Pancrustacean phylogeny: hexapods are terrestrial crustaceans and maxillopods are not monophyletic

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

A new interpretation of dragonfly wing venation based upon Early Upper Carboniferous fossils from Argentina (Insecta: Odonatoidea) and basic character states in pterygote wings

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

The general stochastic model of nucleotide substitution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Bushes in the tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Ecdysozoan mitogenomics: evidence for a common origin of the legged invertebrates, the Panarthropoda

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Adaptive genic evolution in the Drosophila genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Choosing Appropriate Substitution Models for the Phylogenetic Analysis of Protein-Coding Sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

The problem of rooting rapid radiations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

A phylogenomic approach to resolve the basal pterygote divergence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

A phosphatocopid crustacean with appendages from the Lower Cambrian

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Testing the molecular clock: molecular and paleontological estimates of divergence times in the Echinoidea (Echinodermata).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

A rapid bootstrap algorithm for the RAxML Web servers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

On the distributions of bootstrap support and posterior distributions for a star tree

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Revealing pancrustacean relationships: phylogenetic analysis of ribosomal protein genes places Collembola (springtails) in a monophyletic Hexapoda and reinforces the discrepancy between mitochondrial and nuclear DNA markers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Profiling phylogenetic informativeness

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Taxon sampling and the optimal rates of evolution for phylogenetic inference.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Can comprehensive background knowledge be incorporated into substitution models to improve phylogenetic analyses? A case study on major arthropod relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

The Phylogeny of the Extant Hexapod Orders

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Ancient rapid radiations of insects: challenges for phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Deciphering ancient rapid radiations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Missing data in phylogenetic analysis: reconciling results from simulations and empirical data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

The homology of wing base sclerites and flight muscles in Ephemeroptera and Neoptera and the morphology of the pterothorax of Habroleptoides confusa (Insecta: Ephemeroptera: Leptophlebiidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Flight adaptations in Palaeozoic Palaeoptera (Insecta).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

The complete mitochondrial genome of Parafronurus youi (Insecta: Ephemeroptera) and phylogenetic position of the Ephemeroptera

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Phylogenetic system and zoogeography of the Plecoptera

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

Increased taxon sampling greatly reduces phylogenetic error

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYS093

21 January 2018

Identifiers

DOI

10.1093/SYSBIO/SYS093

1 reference

1 August 2017

1 reference

PubMed ID

23220768