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Chapter 9: Analyses using disease ontologies
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scholarly article
1 reference
stated in
Europe PubMed Central
PubMed ID
23300417
retrieved
2 August 2017
title
Chapter 9: Analyses using disease ontologies
(English)
1 reference
stated in
Europe PubMed Central
PubMed ID
23300417
retrieved
2 August 2017
main subject
ontology
0 references
author
Mark A. Musen
series ordinal
3
object named as
Mark A Musen
0 references
Tyler Cole
object named as
Tyler Cole
series ordinal
2
0 references
Nigam H. Shah
series ordinal
1
object named as
Nigam H Shah
1 reference
stated in
Europe PubMed Central
PubMed ID
23300417
retrieved
2 August 2017
publication date
27 December 2012
1 reference
stated in
Europe PubMed Central
PubMed ID
23300417
retrieved
2 August 2017
published in
PLOS Computational Biology
1 reference
stated in
Europe PubMed Central
PubMed ID
23300417
retrieved
2 August 2017
volume
8
1 reference
stated in
Europe PubMed Central
PubMed ID
23300417
retrieved
2 August 2017
issue
12
1 reference
stated in
Europe PubMed Central
PubMed ID
23300417
retrieved
2 August 2017
page(s)
e1002827
1 reference
stated in
Europe PubMed Central
PubMed ID
23300417
retrieved
2 August 2017
copyright license
Creative Commons Attribution 4.0 International
start time
27 December 2012
1 reference
stated in
April 2022 Public Data File from Crossref
copyright status
copyrighted
0 references
cites work
Enabling enrichment analysis with the Human Disease Ontology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
The open biomedical annotator
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
A Comprehensive Analysis of Five Million UMLS Metathesaurus Terms Using Eighteen Million MEDLINE Citations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
An ontology-neutral framework for enrichment analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
Ontology engineering
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
In silico functional profiling of human disease-associated and polymorphic amino acid substitutions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
Analysis of biological processes and diseases using text mining approaches
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
Generation of Gene Ontology benchmark datasets with various types of positive signal
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
Comparison of concept recognizers for building the Open Biomedical Annotator
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
Annotating the human genome with Disease Ontology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
BioPortal: ontologies and integrated data resources at the click of a mouse
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
Ontology-driven indexing of public datasets for translational bioinformatics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
The Human Ageing Genomic Resources: online databases and tools for biogerontologists.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
Text mining for biology - the way forward: opinions from leading scientists
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
Use and misuse of the gene ontology annotations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
Improved detection of overrepresentation of Gene-Ontology annotations with parent child analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
A review of modern multiple hypothesis testing, with particular attention to the false discovery proportion.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
The human disease network
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
GOTax: investigating biological processes and biochemical activities along the taxonomic tree.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
A scalable method for integration and functional analysis of multiple microarray datasets
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
Additional gene ontology structure for improved biological reasoning
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
Ontological analysis of gene expression data: current tools, limitations, and open problems
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
CLENCH: a program for calculating Cluster ENriCHment using the Gene Ontology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
GoMiner: a resource for biological interpretation of genomic and proteomic data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
Global functional profiling of gene expression.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
Microarray data normalization and transformation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
Whole-genome expression analysis: challenges beyond clustering
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
Significance analysis of microarrays applied to the ionizing radiation response
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
Gene expression data analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531278
retrieved
7 July 2018
SNOMED CT milestones: endorsements are added to already-impressive standards credentials
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23300417
retrieved
12 December 2020
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Identifiers
DOI
10.1371/JOURNAL.PCBI.1002827
1 reference
stated in
Europe PubMed Central
PubMed ID
23300417
retrieved
2 August 2017
DBLP publication ID
journals/ploscb/ShahCM12
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
PMCID
3531278
1 reference
stated in
Europe PubMed Central
PubMed ID
23300417
retrieved
2 August 2017
PubMed ID
23300417
1 reference
stated in
Europe PubMed Central
PubMed ID
23300417
retrieved
2 August 2017
ResearchGate publication ID
234090015
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