(Q34692463)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25261464%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

title

Genomic repeat abundances contain phylogenetic signal (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25261464%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

1 reference

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25261464%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Petr Novak

series ordinal

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25261464%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

2

Mark W Chase

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25261464%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

8

Hanna Weiss-Schneeweiss

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25261464%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

1

Steven Dodsworth

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25261464%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

3

Laura J Kelly

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25261464%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

4

Ilia J Leitch

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25261464%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

author name string

Mathieu Piednoël

series ordinal

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25261464%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Andrew R Leitch

series ordinal

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25261464%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

publication date

25 September 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25261464%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25261464%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

volume

64

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25261464%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25261464%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

page(s)

112-126

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25261464%20AND%20SRC:MED&resulttype=core&format=json

Pulling out the 1%: whole-genome capture for the targeted enrichment of ancient DNA sequencing libraries

20 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Whole genome phylogeny for 21 Drosophila species using predicted 2b-RAD fragments

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Genome skimming reveals the origin of the Jerusalem Artichoke tuber crop species: neither from Jerusalem nor an artichoke

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Molecular phylogenetics of New Caledonian Diospyros (Ebenaceae) using plastid and nuclear markers

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Next-generation museomics disentangles one of the largest primate radiations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Phylogenetic signal variation in the genomes of Medicago (Fabaceae).

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Potential use of low-copy nuclear genes in DNA barcoding: a comparison with plastid genes in two Hawaiian plant radiations.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Geometric morphometric character suites as phylogenetic data: extracting phylogenetic signal from gastropod shells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Cnidarian phylogenetic relationships as revealed by mitogenomics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Systematics, biogeography, and character evolution of the legume tribe Fabeae with special focus on the middle-Atlantic island lineages

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Differential dynamics of transposable elements during long-term diploidization of Nicotiana section Repandae (Solanaceae) allopolyploid genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

New reports of nuclear DNA content for 407 vascular plant taxa from the United States

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

How to open the treasure chest? Optimising DNA extraction from herbarium specimens

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Highly conserved low-copy nuclear genes as effective markers for phylogenetic analyses in angiosperms

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Stretching the rules: monocentric chromosomes with multiple centromere domains

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Next-generation sequencing reveals the impact of repetitive DNA across phylogenetically closely related genomes of Orobanchaceae.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Estimating divergence dates and substitution rates in the Drosophila phylogeny

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Independent, rapid and targeted loss of highly repetitive DNA in natural and synthetic allopolyploids of Nicotiana tabacum.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Inferring phylogenies from RAD sequence data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Survey sequencing reveals elevated DNA transposon activity, novel elements, and variation in repetitive landscapes among vesper bats.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Ecological and genetic factors linked to contrasting genome dynamics in seed plants

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

A consistent phylogenetic backbone for the fungi

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Targeted amplicon sequencing (TAS): a scalable next-gen approach to multilocus, multitaxa phylogenetics.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Increasing the data size to accurately reconstruct the phylogenetic relationships between nine subgroups of the Drosophila melanogaster species group (Drosophilidae, Diptera).

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Families of transposable elements, population structure and the origin of species

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Phylogenomic analysis resolves the interordinal relationships and rapid diversification of the laurasiatherian mammals

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Angiosperm phylogeny: 17 genes, 640 taxa

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Field guide to next-generation DNA sequencers

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Improving animal phylogenies with genomic data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Diverse retrotransposon families and an AT-rich satellite DNA revealed in giant genomes of Fritillaria lilies.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Why barcode? High-throughput multiplex sequencing of mitochondrial genomes for molecular systematics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

A DNA barcode for land plants

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Contrasting evolutionary dynamics between angiosperm and mammalian genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Phylogenomics revives traditional views on deep animal relationships

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Is there a molecular key to the level of "biological species" in eukaryotes? A DNA guide

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Genomic plasticity and the diversity of polyploid plants

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

A unified classification system for eukaryotic transposable elements

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Targeted high-throughput sequencing of tagged nucleic acid samples

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Application of phylogenetic networks in evolutionary studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Molecular phylogenetic evidence for the monophyly of Fritillaria and Lilium (Liliaceae; Liliales) and the infrageneric classification of Fritillaria

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

The ecology of the genome - mobile DNA elements and their hosts

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Molecular systematics, GISH and the origin of hybrid taxa in Nicotiana (Solanaceae).

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Biological identifications through DNA barcodes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Evolutionary implications of microbial genome tetranucleotide frequency biases

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

A genomic schism in birds revealed by phylogenetic analysis of DNA strings

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

Genome size and the proportion of repeated nucleotide sequence DNA in plants

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4265144

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III

7 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU080

Phylogenetic relationships in Nicotiana (Solanaceae) inferred from multiple plastid DNA regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU080

Nuclear glutamine synthetase evolution in Nicotiana: phylogenetics and the origins of allotetraploid and homoploid (diploid) hybrids

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU080

Targeted enrichment strategies for next-generation plant biology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU080

Evolutionary relationships in the medicinally important genus Fritillaria L. (Liliaceae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU080

TNT, a free program for phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU080

Phylogenetic analysis of 73 060 taxa corroborates major eukaryotic groups

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU080

Nearly complete rRNA genes assembled from across the metazoan animals: effects of more taxa, a structure-based alignment, and paired-sites evolutionary models on phylogeny reconstruction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU080

Sexual selection and speciation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU080

RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU080

A plastid gene phylogeny of the non-photosynthetic parasitic Orobanche (Orobanchaceae) and related genera.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU080

Characterization of the LTR retrotransposon repertoire of a plant clade of six diploid and one tetraploid species

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU080

Diploidization and genome size change in allopolyploids is associated with differential dynamics of low- and high-copy sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU080

Phylogeny of holoparasitic Orobanche (Orobanchaceae) inferred from nuclear ITS sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU080

Long-term genome diploidization in allopolyploid Nicotiana section Repandae (Solanaceae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU080

Intragenic Recombination Events and Evidence for Hybrid Speciation in Nicotiana (Solanaceae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU080

Why size really matters when sequencing plant genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU080

RECONSTRUCTING THE COMPLEX EVOLUTIONARY ORIGIN OF WILD ALLOPOLYPLOID TOBACCOS (NICOTIANASECTIONSUAVEOLENTES)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU080

Comparative genomics and repetitive sequence divergence in the species of diploidNicotianasection Alatae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU080

Sequences and Phylogenies of Plant Pararetroviruses, Viruses, and Transposable Elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU080

Molecular cytogenetic analyses and phylogenetic studies in the Nicotiana section Tomentosae

21 January 2018

1 reference

12 December 2020

Next Generation Sequencing Reveals Genome Downsizing in Allotetraploid Nicotiana tabacum, Predominantly through the Elimination of Paternally Derived Repetitive DNAs

1 reference

12 December 2020

Gene trees and species trees are not the same

1 reference

12 December 2020

Presidential address. Transposable elements, epigenetics, and genome evolution

1 reference

12 December 2020

Identifiers

DOI

10.1093/SYSBIO/SYU080

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25261464%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25261464%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25261464%20AND%20SRC:MED&resulttype=core&format=json