(Q36363457)

13 August 2017

title

Resolving relationships among the megadiverse butterflies and moths with a novel pipeline for Anchored Phylogenomics (English)

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13 August 2017

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6

Akito Y Kawahara

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13 August 2017

Emily Moriarty Lemmon

series ordinal

4

object named as

Emily Moriarty Lemmon

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13 August 2017

3

Alan R Lemmon

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13 August 2017

2

Chandra Earl

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13 August 2017

Jesse W Breinholt

1

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13 August 2017

Lei Xiao

series ordinal

5

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13 August 2017

publication date

4 May 2017

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13 August 2017

1 reference

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

13 August 2017

cites work

1 reference

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Can RNA-Seq resolve the rapid radiation of advanced moths and butterflies (Hexapoda: Lepidoptera: Apoditrysia)? An exploratory study

21 January 2018

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Addressing gene tree discordance and non-stationarity to resolve a multi-locus phylogeny of the flatfishes (Teleostei: Pleuronectiformes).

21 January 2018

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Unlocking the vault: next-generation museum population genomics

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Sequence Capture and Phylogenetic Utility of Genomic Ultraconserved Elements Obtained from Pinned Insect Specimens

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

A transcriptome approach to ecdysozoan phylogeny.

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Phylotranscriptomics: saturated third codon positions radically influence the estimation of trees based on next-gen data

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Bridger: a new framework for de novo transcriptome assembly using RNA-seq data

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Preserving and vouchering butterflies and moths for large-scale museum-based molecular research

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Can deliberately incomplete gene sample augmentation improve a phylogeny estimate for the advanced moths and butterflies (Hexapoda: Lepidoptera)?

21 January 2018

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Targeted enrichment strategies for next-generation plant biology.

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

HaMStR: profile hidden markov model based search for orthologs in ESTs

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Search and clustering orders of magnitude faster than BLAST

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Target enrichment of ultraconserved elements from arthropods provides a genomic perspective on relationships among Hymenoptera

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Spider phylogenomics: untangling the Spider Tree of Life

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

A phylogenetic backbone for Bivalvia: an RNA-seq approach

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Next-generation museomics disentangles one of the largest primate radiations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Expanding anchored hybrid enrichment to resolve both deep and shallow relationships within the spider tree of life

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Cretaceous origin and repeated tertiary diversification of the redefined butterflies

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Should genes with missing data be excluded from phylogenetic analyses?

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Targeted capture in evolutionary and ecological genomics.

21 January 2018

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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Increased gene sampling strengthens support for higher-level groups within leaf-mining moths and relatives (Lepidoptera: Gracillariidae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Phylogenomics provides strong evidence for relationships of butterflies and moths

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Evolution of Manduca sexta hornworms and relatives: biogeographical analysis reveals an ancestral diversification in Central America

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Selecting optimal partitioning schemes for phylogenomic datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Anchored hybrid enrichment for massively high-throughput phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

High-throughput identification of informative nuclear loci for shallow-scale phylogenetics and phylogeography

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Applications of next-generation sequencing to phylogeography and phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

A phylogenomic approach to resolve the arthropod tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Ultrafast approximation for phylogenetic bootstrap

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

ASTRAL: genome-scale coalescent-based species tree estimation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Phylogenomics resolves the timing and pattern of insect evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

A Monte Carlo approach successfully identifies randomness in multiple sequence alignments: a more objective means of data exclusion

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Comprehensive gene and taxon coverage elucidates radiation patterns in moths and butterflies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

How many bootstrap replicates are necessary?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

The impact of anchored phylogenomics and taxon sampling on phylogenetic inference in narrow-mouthed frogs (Anura, Microhylidae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

A molecular phylogeny ofEumorpha(Lepidoptera: Sphingidae) and the evolution of anti-predator larval eyespots

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Effectiveness of phylogenomic data and coalescent species-tree methods for resolving difficult nodes in the phylogeny of advanced snakes (Serpentes: Caenophidia).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Toward reconstructing the evolution of advanced moths and butterflies (Lepidoptera: Ditrysia): an initial molecular study

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

A large-scale, higher-level, molecular phylogenetic study of the insect order Lepidoptera (moths and butterflies)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Calculating bootstrap probabilities of phylogeny using multilocus sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Radical instability and spurious branch support by likelihood when applied to matrices with non-random distributions of missing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

A confounding effect of missing data on character conflict in maximum likelihood and Bayesian MCMC phylogenetic analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Insect phylogenomics: exploring the source of incongruence using new transcriptomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Target capture and massively parallel sequencing of ultraconserved elements for comparative studies at shallow evolutionary time scales

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

A molecular phylogeny for yponomeutoidea (insecta, Lepidoptera, ditrysia) and its implications for classification, biogeography and the evolution of host plant use

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Genomic outposts serve the phylogenomic pioneers: designing novel nuclear markers for genomic DNA extractions of lepidoptera

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

A draft sequence for the genome of the domesticated silkworm (Bombyx mori).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

An index of substitution saturation and its application

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

A heterozygous moth genome provides insights into herbivory and detoxification

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Anchored enrichment dataset for true flies (order Diptera) reveals insights into the phylogeny of flower flies (family Syrphidae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

The monarch butterfly genome yields insights into long-distance migration

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Increased gene sampling yields robust support for higher-level clades within Bombycoidea (Lepidoptera)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

Resolving discrepancy between nucleotides and amino acids in deep-level arthropod phylogenomics: differentiating serine codons in 21-amino-acid models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

When phylogenetic assumptions are violated: base compositional heterogeneity and among-site rate variation in beetle mitochondrial phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

A molecular phylogeny for the oldest (nonditrysian) lineages of extant Lepidoptera, with implications for classification, comparative morphology and life-history evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYX048

21 January 2018

Identifiers

DOI

10.1093/SYSBIO/SYX048

1 reference

13 August 2017

1 reference