(Q36386735)

13 August 2017

System response of metabolic networks in Chlamydomonas reinhardtii to total available ammonium (English)

1 reference

Chlamydomonas reinhardtii

13 August 2017

1 reference

Dinesh K Barupal

3

0 references

Oliver Fiehn

series ordinal

4

object named as

Oliver Fiehn

1 reference

13 August 2017

Do Yup Lee

1

1 reference

PMCID

3494149

13 August 2017

Jeong-Jin Park

series ordinal

2

1 reference

13 August 2017

10 July 2012

1 reference

Molecular & Cellular Proteomics

13 August 2017

1 reference

13 August 2017

11

1 reference

13 August 2017

10

1 reference

13 August 2017

973-988

1 reference

PMCID

3494149

describes a project that uses

13 August 2017

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

cites work

Chlamydomonas reinhardtii as a viable platform for the production of recombinant proteins: current status and perspectives

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Novel shuttle markers for nuclear transformation of the green alga Chlamydomonas reinhardtii

30 September 2017

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Extending biochemical databases by metabolomic surveys

30 September 2017

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Effect of nutrients on growth and lipid accumulation in the green algae Dunaliella tertiolecta

30 September 2017

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Changes in transcript abundance in Chlamydomonas reinhardtii following nitrogen deprivation predict diversion of metabolism

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Improved LC-MS/MS spectral counting statistics by recovering low-scoring spectra matched to confidently identified peptide sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Increased lipid accumulation in the Chlamydomonas reinhardtii sta7-10 starchless isoamylase mutant and increased carbohydrate synthesis in complemented strains.

30 September 2017

1 reference

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Characterizing the anaerobic response of Chlamydomonas reinhardtii by quantitative proteomics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis

30 September 2017

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FiehnLib: Mass Spectral and Retention Index Libraries for Metabolomics Based on Quadrupole and Time-of-Flight Gas Chromatography/Mass Spectrometry

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Algal lipid bodies: stress induction, purification, and biochemical characterization in wild-type and starchless Chlamydomonas reinhardtii

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

KEGG for representation and analysis of molecular networks involving diseases and drugs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Human gut microbiome adopts an alternative state following small bowel transplantation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Metabolomics-driven quantitative analysis of ammonia assimilation in E. coli

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

PubChem: a public information system for analyzing bioactivities of small molecules

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Developing and validating predictive decision tree models from mining chemical structural fingerprints and high-throughput screening data in PubChem

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Effects of nitrogen sources on cell growth and lipid accumulation of green alga Neochloris oleoabundans

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

A systems view of nitrogen nutrient and metabolite responses in Arabidopsis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

PubChemSR: a search and retrieval tool for PubChem

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Microalgal triacylglycerols as feedstocks for biofuel production: perspectives and advances

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

High quality metabolomic data for Chlamydomonas reinhardtii

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Quality control for plant metabolomics: reporting MSI-compliant studies

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Fatty acid unsaturation, mobilization, and regulation in the response of plants to stress

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

The Chlamydomonas genome reveals the evolution of key animal and plant functions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Novel metabolism in Chlamydomonas through the lens of genomics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Conservation of the metabolomic response to starvation across two divergent microbes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

When transcriptome meets metabolome: fast cellular responses of yeast to sudden relief of glucose limitation.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Review: on the analysis and interpretation of correlations in metabolomic data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Gene-to-metabolite networks for terpenoid indole alkaloid biosynthesis in Catharanthus roseus cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

VANTED: a system for advanced data analysis and visualization in the context of biological networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Rubisco activase - Rubisco's catalytic chaperone

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

An integrated functional genomics and metabolomics approach for defining poor prognosis in human neuroendocrine cancers.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Bioconductor: open software development for computational biology and bioinformatics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Metabolomics by numbers: acquiring and understanding global metabolite data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

REGULATION OF FATTY ACID SYNTHESIS

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Starvation response in mouse liver shows strong correlation with life-span-prolonging processes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Cytoscape: a software environment for integrated models of biomolecular interaction networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Local and long-range signaling pathways regulating plant responses to nitrate.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Carbamoyl-phosphate synthetase. Creation of an escape route for ammonia

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Arabidopsis seedling growth, storage lipid mobilization, and photosynthetic gene expression are regulated by carbon:nitrogen availability

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Phospho-proteomics: evaluation of the use of enzymatic de-phosphorylation and differential mass spectrometric peptide mass mapping for site specific phosphorylation assignment in proteins separated by gel electrophoresis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Sulfur economy and cell wall biosynthesis during sulfur limitation of Chlamydomonas reinhardtii

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Integrated genomic and proteomic analyses of a systematically perturbed metabolic network

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Potential role of nuclear translocation of glyceraldehyde-3-phosphate dehydrogenase in apoptosis and oxidative stress

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Acclimation of Chlamydomonas reinhardtii to its nutrient environment

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Metabolite profiling for plant functional genomics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Intracellular carbonic anhydrase is essential to photosynthesis in Chlamydomonas reinhardtii at atmospheric levels of CO2. Demonstration via genomic complementation of the high-CO2-requiring mutant ca-1.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

30 September 2017

Plant cytochrome P450.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Structure and expression of the gene encoding the periplasmic arylsulfatase of Chlamydomonas reinhardtii

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Post-Transcriptional and Translational Controls of Gene Expression in Eukaryotes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3494149

Microalgae for biodiesel production and other applications: A review

30 September 2017

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.016733

Large-scale biodiesel production from microalga Chlorella protothecoides through heterotrophic cultivation in bioreactors.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.016733

Metabolic and gene expression changes triggered by nitrogen deprivation in the photoautotrophically grown microalgae Chlamydomonas reinhardtii and Coccomyxa sp. C-169.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.016733

Integrating transcriptional and metabolite profiles to direct the engineering of lovastatin-producing fungal strains.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.016733

Correlating the transcriptome, proteome, and metabolome in the environmental adaptation of a hyperthermophile.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.016733

Metabolite profiling of Chlamydomonas reinhardtii under nutrient deprivation

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.016733

Targeted proteomics for Chlamydomonas reinhardtii combined with rapid subcellular protein fractionation, metabolomics and metabolic flux analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.016733

Second Generation Biofuels: High-Efficiency Microalgae for Biodiesel Production

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.016733

The Chlamydomonas reinhardtii organellar genomes respond transcriptionally and post-transcriptionally to abiotic stimuli

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.016733

R: A Language for Data Analysis and Graphics

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.016733

Description of several chemical structure file formats used by computer programs developed at Molecular Design Limited

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.016733

The effect of ultrasonic pre-treatment on the catalytic activity of lipases in aqueous and non-aqueous media

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.016733

Chemical Similarity Searching

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.016733

Purification and characterization of an L-amino-acid oxidase from Chlamydomonas reinhardtii.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.016733

Identification and expression analysis of two inorganic C- and N-responsive genes encoding novel and distinct molecular forms of eukaryotic phosphoenolpyruvate carboxylase in the green microalga Chlamydomonas reinhardtii

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.016733

High-density fermentation of microalga Chlorella protothecoides in bioreactor for microbio-diesel production.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.016733

Correlation of Relative Abundance Ratios Derived from Peptide Ion Chromatograms and Spectrum Counting for Quantitative Proteomic Analysis Using Stable Isotope Labeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.016733

Statistical Analysis of Membrane Proteome Expression Changes inSaccharomycescerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.016733

Extensive accumulation of an extracellular L-amino-acid oxidase during gametogenesis of Chlamydomonas reinhardtii

21 January 2018

1 reference

12 December 2020

Coordination of Chloroplastic Metabolism in N-Limited Chlamydomonas reinhardtii by Redox Modulation (I. The Activation of Phosphoribulosekinase and Glucose-6-Phosphate Dehydrogenase Is Relative to the Photosynthetic Supply of Electrons)

1 reference

12 December 2020

Life-cycle assessment of biodiesel production from microalgae

1 reference

12 December 2020

Increase in Chlorella strains calorific values when grown in low nitrogen medium

1 reference

12 December 2020

The Chlamydomonas Sourcebook. A Comprehensive Guide to Biology and Laboratory Use. Elizabeth H. Harris. Academic Press, San Diego, CA, 1989. xiv, 780 pp., illus. $145

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12 December 2020

Fermentative Metabolism of Chlamydomonas reinhardii: III. Photoassimilation of Acetate

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12 December 2020

Identifiers

DOI

10.1074/MCP.M111.016733

1 reference

13 August 2017

1 reference

13 August 2017

1 reference

PMCID

3494149