(Q42169811)

17 October 2017

Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data. (English)

1 reference

17 October 2017

1 reference

1 reference

Cho-Yi Chen

2

0 references

John Quackenbush

John Quackenbush

9

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Abhijeet R Sonawane

Abhijeet R Sonawane

6

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Kimberly Glass

8

Kimberly Glass

1 reference

17 October 2017

5

John Platig

1 reference

17 October 2017

Joseph N Paulson

1

1 reference

17 October 2017

Camila M Lopes-Ramos

3

1 reference

17 October 2017

Marieke L Kuijjer

4

1 reference

17 October 2017

Maud Fagny

7

1 reference

17 October 2017

3 October 2017

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17 October 2017

1 reference

17 October 2017

18

1 reference

17 October 2017

1

1 reference

17 October 2017

437

1 reference

describes a project that uses

17 October 2017

edgeR

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

limma

limma

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/s12859-017-1847-x

0 references

cites work

Regulatory network changes between cell lines and their tissues of origin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627434

Exploring regulation in tissues with eQTL networks

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627434

Estimating Gene Regulatory Networks with pandaR.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627434

Whose sample is it anyway? Widespread misannotation of samples in transcriptomics studies

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627434

Evaluating the Effect of Cell Culture on Gene Expression in Primary Tissue Samples Using Microfluidic-Based Single Cell Transcriptional Analysis.

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627434

A survey of best practices for RNA-seq data analysis

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627434

Sexually-dimorphic targeting of functionally-related genes in COPD

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627434

voom: Precision weights unlock linear model analysis tools for RNA-seq read counts

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627434

Ectopically expressed variant form of sperm mitochondria-associated cysteine-rich protein augments tumorigenicity of the stem cell population of lung adenocarcinoma cells

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627434

Data-based filtering for replicated high-throughput transcriptome sequencing experiments

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627434

Human housekeeping genes, revisited

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627434

Differential expression analysis for sequence count data

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627434

Independent filtering increases detection power for high-throughput experiments

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627434

A scaling normalization method for differential expression analysis of RNA-seq data

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627434

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627434

Mapping and quantifying mammalian transcriptomes by RNA-Seq

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627434

The transcriptional landscape of the yeast genome defined by RNA sequencing

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627434

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627434

Comparative genomics of the sperm mitochondria-associated cysteine-rich protein gene

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627434

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627434

Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

26 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5627434

Comprehensive genomic characterization defines human glioblastoma genes and core pathways

26 October 2017

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12859-017-1847-X

10.1186/S12859-017-1847-X

21 January 2018

Identifiers

DOI

1 reference

journals/bmcbi/PaulsonCLKPSFGQ17

17 October 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

17 October 2017

1 reference