(Q48108471)

8 February 2018

title

Constraining uncertainty in the timescale of angiosperm evolution and the veracity of a Cretaceous Terrestrial Revolution. (English)

1 reference

8 February 2018

0 references

4

1 reference

8 February 2018

Jose Barba-Montoya

object named as

Jose Barba-Montoya

1

0 references

Mario Dos Reis

object named as

Mario Dos Reis

2

0 references

Harald Schneider

object named as

Harald Schneider

3

0 references

author name string

Ziheng Yang

5

1 reference

8 February 2018

language of work or name

English

0 references

publication date

5 February 2018

1 reference

8 February 2018

published in

New Phytologist

1 reference

8 February 2018

Probabilistic methods surpass parsimony when assessing clade support in phylogenetic analyses of discrete morphological data.

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1 reference

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Using Phylogenomic Data to Explore the Effects of Relaxed Clocks and Calibration Strategies on Divergence Time Estimation: Primates as a Test Case.

2 November 2018

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The Past Sure Is Tense: On Interpreting Phylogenetic Divergence Time Estimates

2 November 2018

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Testing the molecular clock using mechanistic models of fossil preservation and molecular evolution.

2 November 2018

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Yuhania: a unique angiosperm from the Middle Jurassic of Inner Mongolia, China

2 November 2018

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Reconstructing the genome of the most recent common ancestor of flowering plants

2 November 2018

1 reference

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Palaeobotanical redux: revisiting the age of the angiosperms

2 November 2018

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Uncertain-tree: discriminating among competing approaches to the phylogenetic analysis of phenotype data

2 November 2018

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Efficient Bayesian Species Tree Inference under the Multispecies Coalescent

2 November 2018

1 reference

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Evaluating the Impact of Genomic Data and Priors on Bayesian Estimates of the Angiosperm Evolutionary Timescale

2 November 2018

1 reference

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The evolution of methods for establishing evolutionary timescales

2 November 2018

1 reference

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A perfect flower from the Jurassic of China

2 November 2018

1 reference

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Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data

2 November 2018

1 reference

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Tips and nodes are complementary not competing approaches to the calibration of molecular clocks

2 November 2018

1 reference

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Bayesian molecular clock dating of species divergences in the genomics era.

2 November 2018

1 reference

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Uncertainty in the Timing of Origin of Animals and the Limits of Precision in Molecular Timescales

2 November 2018

1 reference

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Total-Evidence Dating under the Fossilized Birth-Death Process

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Combining phylogenomic and supermatrix approaches, and a time-calibrated phylogeny for squamate reptiles (lizards and snakes) based on 52 genes and 4162 species

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Dating Tips for Divergence-Time Estimation

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Montsechia, an ancient aquatic angiosperm

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Heterogeneous Rates of Molecular Evolution and Diversification Could Explain the Triassic Age Estimate for Angiosperms

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

A metacalibrated time-tree documents the early rise of flowering plant phylogenetic diversity.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Characterization of the uncertainty of divergence time estimation under relaxed molecular clock models using multiple loci

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Calibration uncertainty in molecular dating analyses: there is no substitute for the prior evaluation of time priors

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Phylogenomics resolves the timing and pattern of insect evolution

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Extant diversity of bryophytes emerged from successive post-Mesozoic diversification bursts.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Bayesian analysis using a simple likelihood model outperforms parsimony for estimation of phylogeny from discrete morphological data

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Epiphytic leafy liverworts diversified in angiosperm-dominated forests

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

The enigma of the rise of angiosperms: can we untie the knot?

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

From algae to angiosperms-inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Three keys to the radiation of angiosperms into freezing environments

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Angiosperm-like pollen and Afropollis from the Middle Triassic (Anisian) of the Germanic Basin (Northern Switzerland)

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Fossilization causes organisms to appear erroneously primitive by distorting evolutionary trees

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Land plant evolutionary timeline: gene effects are secondary to fossil constraints in relaxed clock estimation of age and substitution rates

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Bees diversified in the age of eudicots

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Rise to dominance of angiosperm pioneers in European Cretaceous environments

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Impact of missing data on phylogenies inferred from empirical phylogenomic data sets

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

A total-evidence approach to dating with fossils, applied to the early radiation of the hymenoptera

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Testing the impact of calibration on molecular divergence times using a fossil-rich group: the case of Nothofagus (Fagales).

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Best practices for justifying fossil calibrations

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Establishing a time-scale for plant evolution

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Angiosperm diversification through time

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Seed ferns from the late Paleozoic and Mesozoic: Any angiosperm ancestors lurking there?

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

The meaning of Darwin's 'abominable mystery'.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

The age and diversification of the angiosperms re-revisited

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Angiosperm phylogeny: 17 genes, 640 taxa

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Divergence time estimation using fossils as terminal taxa and the origins of Lissamphibia.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Evaluation of Bayesian models of substitution rate evolution--parental guidance versus mutual independence

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Approximate likelihood calculation on a phylogeny for Bayesian estimation of divergence times

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Improving marginal likelihood estimation for Bayesian phylogenetic model selection

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

The origins of modern biodiversity on land

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Using fossils to break long branches in molecular dating: a comparison of relaxed clocks applied to the origin of angiosperms

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

The impact of the representation of fossil calibrations on Bayesian estimation of species divergence times

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Non-random decay of chordate characters causes bias in fossil interpretation

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Diversity in obscurity: fossil flowers and the early history of angiosperms

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

An examination of phylogenetic models of substitution rate variation among lineages

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Ancestral xerophobia: a hypothesis on the whole plant ecophysiology of early angiosperms.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

A general comparison of relaxed molecular clock models

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Calibration choice, rate smoothing, and the pattern of tetrapod diversification according to the long nuclear gene RAG-1

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Inferring speciation times under an episodic molecular clock

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

PAML 4: phylogenetic analysis by maximum likelihood

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Computing Bayes factors using thermodynamic integration.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

The age of the angiosperms: a molecular timescale without a clock

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Ferns diversified in the shadow of angiosperms

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Archaefructus--angiosperm precursor or specialized early angiosperm?

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Archaefructaceae, a new basal angiosperm family

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Toward a new synthesis: major evolutionary trends in the angiosperm fossil record

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

Estimating the rate of evolution of the rate of molecular evolution

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6055841

2 November 2018

Identifiers

DOI

10.1111/NPH.15011

1 reference

8 February 2018

0 references

1 reference

8 February 2018