(Q55076081)

English

Metabolomics and Transcriptomics Identify Multiple Downstream Targets of Paraburkholderia phymatum σ54 During Symbiosis with Phaseolus vulgaris.

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scholarly article

1 reference

Europe PubMed Central

17 June 2018

http://europepmc.org/abstract/PMC/5979394

Metabolomics and Transcriptomics Identify Multiple Downstream Targets of Paraburkholderia phymatum σ54 During Symbiosis with Phaseolus vulgaris. (English)

1 reference

Europe PubMed Central

17 June 2018

http://europepmc.org/abstract/PMC/5979394

0 references

transcriptomics

1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

inferred from title

Phaseolus vulgaris

object named as

Phaseolus vulgaris

2 references

based on heuristic

inferred from title

1 reference

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2-C-methylerythritol 4-phosphate

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inosine triphosphate

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1 reference

O-succinyl-L-homoserine

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(Z)-aconitic acid

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aldehydo-N-acetyl-D-glucosamine

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(E)-4-hydroxy-3-methoxycinnamaldehyde

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4-[(2S,3S)-3-tetradeca-1,3,5,8-tetraenyloxiran-2-yl]butanoic acid

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(S)-3-Hydroxytetradecanoyl-CoA; (Acyl-CoA); [M+H]+

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3,4-dihydroxyphenylethyleneglycol

1 reference

1 reference

1,2-naphthalenediol

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sn-glycero-3-phosphocholine

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γ-aminobutyric acid

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Succinic aldehyde

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(R)-glyceryl 1-phosphate

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4-amino-5-imidazole carboxamide

1 reference

2-deoxy-D-ribofuranose 1-phosphate

1 reference

N-acetyl-L-glutamic acid

1 reference

(5S,8E,10E,12R)-5,12-dihydroxyicosa-6,8,10,14-tetraenoic acid

1 reference

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aminolevulinic acid

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pyridoxamine phosphate

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palmitoleic acid

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3',4',5,7-tetrahydroxy-3-methoxyflavone

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5-hydroxyindole-3-acetic acid

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2-hydroxycyclohexan-1-one

1 reference

(2Z)-2-hydroxypenta-2,4-dienoic acid

1 reference

7-methyluric acid

1 reference

(2S)-10-formyltetrahydropteroyl-ξ-glutamic acid

1 reference

2-Butenedioic acid (2Z)-, bis(1-methylethyl) ester

1 reference

alpha-ketoglutaric acid

1 reference

1 reference

flavin mononucleotide

1 reference

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2-C-methyl-D-erythritol 2,4-cyclic diphosphate

1 reference

9-(5-O-phosphono-beta-D-xylofuranosyl)-9H-purin-6-amine

1 reference

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(5S,8R,9S,10R,13S,14R,17S)-17-[(2S,3R,4R,5S)-3,4-dihydroxy-5,6-dimethylheptan-2-yl]-10,13-dimethyl-2,4,5,7,8,9,11,12,14,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthrene-3,6-dione

1 reference

coproporphyrinogen III

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1-O-sinapoyl-beta-D-glucose

1 reference

S-(Formylmethyl)glutathione

1 reference

(3S,5S,8S,9S,10R,13R,14S,17R)-17-[(2S,3R,4R,5S)-3,4-dihydroxy-5,6-dimethylheptan-2-yl]-3-hydroxy-10,13-dimethyl-1,2,3,4,5,7,8,9,11,12,14,15,16,17-tetradecahydrocyclopenta[a]phenanthren-6-one

1 reference

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pseudobaptigenin

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3-methyl-2-oxobutyric acid

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sphingosine 1-phosphate

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estrone sulfate

1 reference

1 reference

(3S,5S,8S,9S,10R,13R,14R,17S)-3-hydroxy-17-[(2S,3S,5R)-3-hydroxy-5,6-dimethylheptan-2-yl]-10,13-dimethyl-1,2,3,4,5,7,8,9,11,12,14,15,16,17-tetradecahydrocyclopenta[a]phenanthren-6-one

1 reference

(2S,3R,4R,5S)-2-[(3S,5S,8S,9S,10R,13R,14S,17R)-3-hydroxy-10,13-dimethyl-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl]-5,6-dimethylheptane-3,4-diol

1 reference

Gabriella Pessi

6

1 reference

Europe PubMed Central

17 June 2018

http://europepmc.org/abstract/PMC/5979394

Christian H. Ahrens

object named as

Christian H Ahrens

4

0 references

5

object named as

Nicola Zamboni

1 reference

Europe PubMed Central

17 June 2018

http://europepmc.org/abstract/PMC/5979394

author name string

Martina Lardi

1

1 reference

Europe PubMed Central

17 June 2018

http://europepmc.org/abstract/PMC/5979394

Yilei Liu

2

1 reference

Europe PubMed Central

17 June 2018

http://europepmc.org/abstract/PMC/5979394

Gaetano Giudice

3

1 reference

Europe PubMed Central

17 June 2018

http://europepmc.org/abstract/PMC/5979394

language of work or name

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publication date

1 April 2018

1 reference

Europe PubMed Central

17 June 2018

http://europepmc.org/abstract/PMC/5979394

full work available at URL

https://www.mdpi.com/1422-0067/19/4/1049/pdf?version=1525346648

1 reference

19 March 2024

https://api.unpaywall.org/v2/10.3390/ijms19041049?email=unpaywall_01@example.com

International Journal of Molecular Sciences

1 reference

Europe PubMed Central

17 June 2018

http://europepmc.org/abstract/PMC/5979394

19

1 reference

Europe PubMed Central

17 June 2018

http://europepmc.org/abstract/PMC/5979394

4

1 reference

Europe PubMed Central

17 June 2018

http://europepmc.org/abstract/PMC/5979394

copyright license

Creative Commons Attribution 4.0 International

1 April 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

describes a project that uses

object named as

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

online access status

1 reference

19 March 2024

https://api.unpaywall.org/v2/10.3390/ijms19041049?email=unpaywall_01@example.com

access restriction status

1 reference

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Competition Experiments for Legume Infection Identify Burkholderia phymatum as a Highly Competitive β-Rhizobium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

NtrC-dependent control of exopolysaccharide synthesis and motility in Burkholderia cenocepacia H111.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

An efficient system for the generation of marked genetic mutants in members of the genus Burkholderia.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

RNA-Seq Analysis of Differential Gene Expression Responding to Different Rhizobium Strains in Soybean (Glycine max) Roots

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Metabolomic Profiling of Bradyrhizobium diazoefficiens-Induced Root Nodules Reveals Both Host Plant-Specific and Developmental Signatures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis - a rich resource to identify new transcripts, proteins and to study gene regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Early signaling, synthesis, transport and metabolism of ureides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

RNA-seq analysis of the Rhizobium tropici CIAT 899 transcriptome shows similarities in the activation patterns of symbiotic genes in the presence of apigenin and salt

1 reference

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18 June 2018

TFBSTools: an R/bioconductor package for transcription factor binding site analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

RpoN Regulates Virulence Factors of Pseudomonas aeruginosa via Modulating the PqsR Quorum Sensing Regulator.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Bacillus cereus ATCC 14579 RpoN (Sigma 54) Is a Pleiotropic Regulator of Growth, Carbohydrate Metabolism, Motility, Biofilm Formation and Toxin Production

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

σ54-Dependent Response to Nitrogen Limitation and Virulence in Burkholderia cenocepacia Strain H111

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Flavonoids as important molecules of plant interactions with the environment.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Complete Genome sequence of Burkholderia phymatum STM815(T), a broad host range and efficient nitrogen-fixing symbiont of Mimosa species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Chemistry and biological activities of flavonoids: an overview

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Nitrogen assimilation in Escherichia coli: putting molecular data into a systems perspective

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Response of Burkholderia cenocepacia H111 to micro-oxia.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Transport and metabolism in legume-rhizobia symbioses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

RND multidrug efflux pumps: what are they good for?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Flavonoids: biosynthesis, biological functions, and biotechnological applications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Role of alternative sigma factor 54 (RpoN) from Vibrio anguillarum M3 in protease secretion, exopolysaccharide production, biofilm formation, and virulence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Comparative genomics of rhizobia nodulating soybean suggests extensive recruitment of lineage-specific genes in adaptations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Exposing the third chromosome of Burkholderia cepacia complex strains as a virulence plasmid.

1 reference

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18 June 2018

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

1 reference

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18 June 2018

Legume-nodulating betaproteobacteria: diversity, host range, and future prospects.

1 reference

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18 June 2018

Differential expression analysis for sequence count data

1 reference

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18 June 2018

Burkholderia phymatum strains capable of nodulating Phaseolus vulgaris are present in Moroccan soils.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Characterization of the NifA-RpoN regulon in Rhizobium etli in free life and in symbiosis with Phaseolus vulgaris

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

An integrated proteomics and transcriptomics reference data set provides new insights into the Bradyrhizobium japonicum bacteroid metabolism in soybean root nodules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Promoter and regulon analysis of nitrogen assimilation factor, sigma54, reveal alternative strategy for E. coli MG1655 flagellar biosynthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

NtrC-dependent regulatory network for nitrogen assimilation in Pseudomonas putida

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Transcriptomic analysis of Rhizobium leguminosarum biovar viciae in symbiosis with host plants Pisum sativum and Vicia cracca

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Transcriptome analysis of Pseudomonas putida in response to nitrogen availability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Dissection of the Bradyrhizobium japonicum NifA+sigma54 regulon, and identification of a ferredoxin gene (fdxN) for symbiotic nitrogen fixation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Metabolic changes of rhizobia in legume nodules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Lotus japonicus metabolic profiling. Development of gas chromatography-mass spectrometry resources for the study of plant-microbe interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Making sense of it all: bacterial chemotaxis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Genetic regulation of biological nitrogen fixation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Studies on lysogenesis. I. The mode of phage liberation by lysogenic Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Statistical significance for genomewide studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Nitrogen assimilation and global regulation in Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

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Nodulation of legumes by members of the beta-subclass of Proteobacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

A new mathematical model for relative quantification in real-time RT-PCR

1 reference

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18 June 2018

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

1 reference

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18 June 2018

The Rhizobium etli rpoN locus: DNA sequence analysis and phenotypical characterization of rpoN, ptsN, and ptsA mutants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

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2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

27 October 2022

https://opencitations.net/index/coci/api/v1/references/10.3390/IJMS19041049

Bradyrhizobium japonicum has two differentially regulated, functional homologs of the sigma 54 gene (rpoN).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5979394

18 June 2018

Transcriptomic profiling of Burkholderia phymatum STM815, Cupriavidus taiwanensis LMG19424 and Rhizobium mesoamericanum STM3625 in response to Mimosa pudica root exudates illuminates the molecular basis of their nodulation competitiveness and symbio

1 reference

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1 reference

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13 August 2018

Transcriptome Analysis of Paraburkholderia phymatum under Nitrogen Starvation and during Symbiosis with Phaseolus Vulgaris

1 reference

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13 August 2018

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1 reference

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13 August 2018

High-throughput, accurate mass metabolome profiling of cellular extracts by flow injection-time-of-flight mass spectrometry.

1 reference

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13 August 2018

D-Alanine:D-alanine ligase as a new target for the flavonoids quercetin and apigenin

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13 August 2018

Burkholderia phymatum is a highly effective nitrogen-fixing symbiont of Mimosa spp. and fixes nitrogen ex planta

1 reference

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13 August 2018

Rhizobium nod Gene Inducers Exuded Naturally from Roots of Common Bean (Phaseolus vulgaris L.).

1 reference

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13 August 2018

Global changes in transcription orchestrate metabolic differentiation during symbiotic nitrogen fixation in Lotus japonicus

1 reference

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13 August 2018

Amino-acid cycling drives nitrogen fixation in the legume–Rhizobium symbiosis

1 reference

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13 August 2018

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1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-Wide Transcript Analysis ofBradyrhizobium japonicumBacteroids in Soybean Root Nodules

1 reference

https://pubmed.ncbi.nlm.nih.gov/29614780

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Comparative Transcriptome Analysis ofRhizobium etliBacteroids: Specific Gene Expression During Symbiotic Nongrowth

1 reference

https://pubmed.ncbi.nlm.nih.gov/29614780

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic diversity of Mimosa pudica rhizobial symbionts in soils of French Guiana: investigating the origin and diversity of Burkholderia phymatum and other beta-rhizobia

1 reference

https://pubmed.ncbi.nlm.nih.gov/29614780

12 December 2020

based on heuristic

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1 reference

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based on heuristic

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Burkholderia phymatum improves salt tolerance of symbiotic nitrogen fixation in Phaseolus vulgaris

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https://opencitations.net/index/coci/api/v1/references/10.3390/IJMS19041049

DNA replication and the division cycle in Escherichia coli

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27 October 2022

https://opencitations.net/index/coci/api/v1/references/10.3390/IJMS19041049

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1 reference

27 October 2022

https://opencitations.net/index/coci/api/v1/references/10.3390/IJMS19041049

Antimicrobial effects of various flavonoids on Escherichia coli O157:H7 cell growth and lipopolysaccharide production

1 reference

27 October 2022

https://opencitations.net/index/coci/api/v1/references/10.3390/IJMS19041049

STUDIES ON LYSOGENESIS I

1 reference

27 October 2022

https://opencitations.net/index/coci/api/v1/references/10.3390/IJMS19041049

Identifiers

10.3390/IJMS19041049

1 reference

Europe PubMed Central

17 June 2018

http://europepmc.org/abstract/PMC/5979394

1 reference

Europe PubMed Central

17 June 2018

http://europepmc.org/abstract/PMC/5979394

1 reference

Europe PubMed Central

17 June 2018

http://europepmc.org/abstract/PMC/5979394

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