(Q58887657)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17454974%20AND%20SRC:MED&resulttype=core&format=json

29 December 2019

title

Alignment and topological accuracy of the direct optimization approach via POY and traditional phylogenetics via ClustalW + PAUP* (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17454974%20AND%20SRC:MED&resulttype=core&format=json

29 December 2019

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17454974%20AND%20SRC:MED&resulttype=core&format=json

29 December 2019

author name string

Michael S Rosenberg

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17454974%20AND%20SRC:MED&resulttype=core&format=json

29 December 2019

publication date

1 April 2007

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17454974%20AND%20SRC:MED&resulttype=core&format=json

29 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17454974%20AND%20SRC:MED&resulttype=core&format=json

29 December 2019

volume

56

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17454974%20AND%20SRC:MED&resulttype=core&format=json

29 December 2019

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17454974%20AND%20SRC:MED&resulttype=core&format=json

29 December 2019

page(s)

182-193

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17454974%20AND%20SRC:MED&resulttype=core&format=json

Reconstructing large regions of an ancestral mammalian genome in silico

29 December 2019

cites work

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Aligning multiple genomic sequences with the threaded blockset aligner

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

The archaea monophyly issue: A phylogeny of translational elongation factor G(2) sequences inferred from an optimized selection of alignment positions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Concepts and tests of homology in the cladistic paradigm

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Simultaneous statistical multiple alignment and phylogeny reconstruction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Generating implied alignments under direct optimization using POY

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Comparison of the accuracies of several phylogenetic methods using protein and DNA sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

The alignment of sets of sequences and the construction of phyletic trees: an integrated method

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Using guide trees to construct multiple-sequence evolutionary HMMs

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

A probabilistic model for the evolution of RNA structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Using evolutionary Expectation Maximization to estimate indel rates

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Evolutionary HMMs: a Bayesian approach to multiple alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Molecular phylogenetics at the Felsenstein zone: approaching the Strepsiptera problem using 5.8S and 28S rDNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

MCALIGN: stochastic alignment of noncoding DNA sequences based on an evolutionary model of sequence evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Aligned 18S and insect phylogeny.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Opinions on multiple sequence alignment, and an empirical comparison of repeatability and accuracy between POY and structural alignment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Use of rRNA secondary structure in phylogenetic studies to identify homologous positions: an example of alignment and data presentation from the frogs

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Bayesian coestimation of phylogeny and sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

A probabilistic treatment of phylogeny and sequence alignment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Effects of nucleotide sequence alignment on phylogeny estimation: a case study of 18S rDNAs of apicomplexa

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Effects of sequence alignment and structural domains of ribosomal DNA on phylogeny reconstruction for the protozoan family sarcocystidae

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Phylogenetic analysis in molecular evolutionary genetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Multiple Sequence Alignment Accuracy and Phylogenetic Inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

How should gaps be treated in parsimony? A comparison of approaches using simulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Poor taxon sampling, poor character sampling, and non-repeatable analyses of a contrived dataset do not provide a more credible estimate of insect phylogeny: a reply to Kjer

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Multiple sequence alignment in phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Benchmarking tools for the alignment of functional noncoding DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Joint Bayesian Estimation of Alignment and Phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Evolutionary distance estimation and fidelity of pair wise sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Multiple sequence alignment accuracy and evolutionary distance estimation

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Heterogeneity of nucleotide frequencies among evolutionary lineages and phylogenetic inference.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Independence of alignment and tree search.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Rose: generating sequence families.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Efficiencies of fast algorithms of phylogenetic inference under the criteria of maximum parsimony, minimum evolution, and maximum likelihood when a large number of sequences are used.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

An evolutionary model for maximum likelihood alignment of DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Molecular homology assessment and phylogeny in the lizard family opluridae (Squamata: Iguania).

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Implied alignment: a synapomorphy-based multiple-sequence alignment method and its use in cladogram search

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

Comparing alignment methods for inferring the history of the new world lizard genus Mabuya (Squamata: Scincidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

18S ribosomal RNA and tetrapod phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701281102

10.1080/10635150701281102

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17454974%20AND%20SRC:MED&resulttype=core&format=json

29 December 2019

1 reference