Reactome Pathway (E39)

language code	label	description	edit
en	Reactome Pathway	schema of a reactome pathway in wikidata	edit
fr	voie métabolique		edit
it	percorso biologico Reactome	schema per descrivere un percorso biologico (con identificatore Reactome)	edit
ja	Reactomeのパスウェイ	WikidataにおけるReactomeパスウェイを記述するためのスキーマ	edit
pl	ścieżka metaboliczna	schemat dla ścieżki metabolicznej	edit

check entities against this Schemaedit

PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX pr: <http://www.wikidata.org/prop/reference/>
PREFIX pq: <http://www.wikidata.org/prop/qualifier/>
PREFIX ps: <http://www.wikidata.org/prop/statement/>
PREFIX wdref: <http://www.wikidata.org/reference/>
PREFIX p: <http://www.wikidata.org/prop/>
PREFIX wdt: <http://www.wikidata.org/prop/direct/>
PREFIX wd: <http://www.wikidata.org/entity/>
PREFIX wikibase: <http://wikiba.se/ontology#>
PREFIX schema: <http://schema.org/> 
PREFIX po: <http://purl.obolibrary.org/obo/PW>
PREFIX go: <http://purl.obolibrary.org/obo/GO>
PREFIX prov: <http://www.w3.org/ns/prov#>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>

# SELECT * WHERE {?reactome wdt:P3937 ?reactID .} LIMIT 10

start=@<#wikidata-reactome-pathway>

<#wikidata-reactome-pathway> EXTRA p:P31 {
	# Statements
	p:P31 (@<react_P31-pathway-term> OR # biological pathway
	       @<P31-gene-ontology-term>)+ ; # go term if present
	p:P361 @<react_P361-part-of>*	;               # part of
	p:P527 @<react_P527-has-part>* ;		# has part 
	p:P2860 @<react_P2860-wikicite>* ;		# cites
	p:P703 @<react_P703-found-in-taxon> ;  	# species 

	# Identifiers
	p:P3937  @<react_P3937-reactome-identifier> ;

}

<react_P31-pathway-term>  {					# always uses this pathway ontology term
       ps:P31	@<react_pathway> ;
       prov:wasDerivedFrom @<react_reactome-reference> ;  
	}


<react_pathway> 
	[ 
             wd:Q4915012                      # biological pathway
    ]

<P31-gene-ontology-term>  {					#
       ps:P31  @<react_go-term> ;
       prov:wasDerivedFrom @<react_reactome-reference> ;  
	}

<react_go-term> {
	p:P31 {
		ps:P31 [
		    wd:Q2996394   # biological process
		    ]
	}
}

<react_P361-part-of> {
	ps:P361  {
            p:P3937  @<react_P3937-reactome-identifier>
        } ;
	prov:wasDerivedFrom @<react_reactome-reference> ;
}

<react_P527-has-part> {
	ps:P527  {
            p:P3937  @<react_P3937-reactome-identifier>
        } ;   # need to add or reaction
	prov:wasDerivedFrom @<react_reactome-reference> ;
}

<react_protein> {
	p:P31	{
		ps:P31	[wd:Q8054] ;
	}
}

<react_P2860-wikicite> {
    ps:P2860	@<react_pubmed-entry> ;
    prov:wasDerivedFrom	@<react_reactome-reference> ;
}

<react_pubmed-entry> {
	p:P698	{
		ps:P698 LITERAL /[0-9]+/ ;
	}
}


<react_P703-found-in-taxon> {
	ps:P703		@<react_reactome-taxons> ;
	prov:wasDerivedFrom	@<react_reactome-reference> ;
}

<react_reactome-taxons> [
	wd:Q15978631 # Homo sapiens
]

<react_P3937-reactome-identifier> {
	ps:P3937	LITERAL /R-[A-Z]{3}-[0-9]+/  ;
	# prov:wasDerivedFrom	@<reactome-reference>
}

<react_reactome-reference> {						   
# Reference to Reactome item in Wikidata
	pr:P248	[ wd:Q2134522 ] ;
	pr:P813 xsd:dateTime ;
	pr:P3937 LITERAL /R-[A-Z]{3}-[0-9]+/ ;
}