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Automated generation of heuristics for biological sequence comparison
scientific article
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instance of
scholarly article
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title
Automated generation of heuristics for biological sequence comparison
(English)
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main subject
automation
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author
Ewan Birney
series ordinal
2
object named as
Ewan Birney
author given names
Ewan
author last names
Birney
1 reference
stated in
PubMed
PubMed ID
15713233
retrieved
27 July 2022
author name string
Guy St C Slater
series ordinal
1
author given names
Guy St C
author last names
Slater
1 reference
stated in
PubMed
PubMed ID
15713233
retrieved
27 July 2022
language of work or name
English
0 references
publication date
2005
0 references
published in
BMC Bioinformatics
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volume
6
0 references
issue
1
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page(s)
31
0 references
describes a project that uses
MUMmer
object named as
MUMmer
1 reference
stated in
CZ Software Mentions: A large dataset of software mentions in the biomedical literature
cites work
GeneWise and Genomewise
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553969
retrieved
19 March 2017
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553969
retrieved
19 March 2017
PairWise and SearchWise: finding the optimal alignment in a simultaneous comparison of a protein profile against all DNA translation frames
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553969
retrieved
19 March 2017
The DNA sequence and comparative analysis of human chromosome 20
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553969
retrieved
19 March 2017
Basic local alignment search tool
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553969
retrieved
19 March 2017
Identification of common molecular subsequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553969
retrieved
19 March 2017
Rapid and sensitive protein similarity searches
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553969
retrieved
19 March 2017
Alignment of whole genomes
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553969
retrieved
19 March 2017
The Ensembl automatic gene annotation system
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553969
retrieved
7 April 2017
SSAHA: a fast search method for large DNA databases
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553969
retrieved
7 April 2017
A computer program for aligning a cDNA sequence with a genomic DNA sequence
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553969
retrieved
7 April 2017
Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553969
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12 September 2017
Generalized affine gap costs for protein sequence alignment
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553969
retrieved
12 September 2017
Perspectives: sequence data base searching in the era of large-scale genomic sequencing
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553969
retrieved
12 September 2017
Identification of coding regions in genomic DNA sequences: an application of dynamic programming and neural networks
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553969
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27 September 2017
A new algorithm for best subsequence alignments with application to tRNA-rRNA comparisons
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553969
retrieved
30 May 2018
Aligning two sequences within a specified diagonal band
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553969
retrieved
30 May 2018
MPBLAST : improved BLAST performance with multiplexed queries
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553969
retrieved
29 November 2018
The language of RNA: a formal grammar that includes pseudoknots.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553969
retrieved
29 November 2018
Dynamite: a flexible code generating language for dynamic programming methods used in sequence comparison.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553969
retrieved
29 November 2018
EST_GENOME: a program to align spliced DNA sequences to unspliced genomic DNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553969
retrieved
29 November 2018
Sequence alignment through pictures.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553969
retrieved
29 November 2018
An improved algorithm for matching biological sequences.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=553969
retrieved
29 November 2018
A local alignment tool for very long DNA sequences
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/15713233
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1186/1471-2105-6-31
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
128592
DBLP publication ID
journals/bmcbi/SlaterB05
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
Dimensions Publication ID
1010551629
0 references
OpenCitations bibliographic resource ID
128592
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
128592
PMCID
553969
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
128592
PubMed ID
15713233
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
128592
ResearchGate publication ID
8020465
0 references
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