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CISA: contig integrator for sequence assembly of bacterial genomes

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CISA: contig integrator for sequence assembly of bacterial genomes (English)

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2

Yu-Chieh Liao

Yu-Chieh

Liao

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4 August 2022

Shin-Hung Lin

1

Shin-Hung

Lin

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4 August 2022

language of work or name

English

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publication date

2013

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published in

PLOS One

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volume

8

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issue

3

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page(s)

e60843

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copyright license

Creative Commons Attribution 4.0 International

start time

28 March 2013

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

MUMmer

object named as

MUMmer

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

De novo assembly of human genomes with massively parallel short read sequencing

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610655

retrieved

19 March 2017

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

1 reference

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PubMed Central

reference URL

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retrieved

19 March 2017

Minimus: a fast, lightweight genome assembler

1 reference

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PubMed Central

reference URL

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retrieved

19 March 2017

Versatile and open software for comparing large genomes

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610655

retrieved

19 March 2017

Comparing de novo genome assembly: the long and short of it

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610655

retrieved

19 March 2017

ABySS: a parallel assembler for short read sequence data

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610655

retrieved

7 April 2017

A beginner's guide to eukaryotic genome annotation

1 reference

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PubMed Central

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12 September 2017

GAGE: A critical evaluation of genome assemblies and assembly algorithms

1 reference

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PubMed Central

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retrieved

12 September 2017

Graph accordance of next-generation sequence assemblies

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610655

retrieved

12 September 2017

Mauve assembly metrics

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610655

retrieved

12 September 2017

De novo assembly of short sequence reads

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610655

retrieved

12 September 2017

De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer

1 reference

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PubMed Central

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retrieved

12 September 2017

Integrating genome assemblies with MAIA.

1 reference

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PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610655

retrieved

30 May 2018

A computational genomics pipeline for prokaryotic sequencing projects

1 reference

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PubMed Central

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retrieved

30 May 2018

Assembly reconciliation.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3610655

retrieved

29 November 2018

Identifiers

DOI

10.1371/JOURNAL.PONE.0060843

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

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release_btcbcih2pvepldupuvu536u34y

1 reference

stated in

Fatcat

reference URL

https://api.fatcat.wiki/v0/release/btcbcih2pvepldupuvu536u34y

retrieved

24 November 2022

based on heuristic

mapped directly with Wikidata item

OpenCitations bibliographic resource ID

1681198

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1681198

ResearchGate publication ID

236106864

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(Q21089792)

CISA: contig integrator for sequence assembly of bacterial genomes

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