(Q21090556)

English

Tensor GSVD of patient- and platform-matched tumor and normal DNA copy-number profiles uncovers chromosome arm-wide patterns of tumor-exclusive platform-consistent alterations encoding for cell transformation and predicting ovarian cancer survival

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scholarly article

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Tensor GSVD of patient- and platform-matched tumor and normal DNA copy-number profiles uncovers chromosome arm-wide patterns of tumor-exclusive platform-consistent alterations encoding for cell transformation and predicting ovarian cancer survival (English)

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ovarian neoplasm

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serous cystadenocarcinoma

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DNA copy number variations

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mathematical model

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glandular and epithelial neoplasm

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1 reference

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based on heuristic

inferred from title

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based on heuristic

inferred from title

tensor decomposition

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based on heuristic

inferred from title

generalized singular value decomposition

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based on heuristic

inferred from title

multi-tensor decomposition

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based on heuristic

inferred from title

4

subject has role

corresponding author

principal investigator

object named as

Orly Alter

author given names

Orly

author last names

Alter

2 references

10.1371/JOURNAL.PONE.0121396

13 August 2022

author name string

Preethi Sankaranarayanan

1

author given names

Preethi

author last names

Sankaranarayanan

1 reference

13 August 2022

Theodore E Schomay

2

author given names

Theodore E

author last names

Schomay

1 reference

13 August 2022

Katherine A Aiello

3

author given names

Katherine A

author last names

Aiello

1 reference

13 August 2022

language of work or name

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publication date

2015

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external data available at URL

https://alterlab.org/OV_prognosis/

Alter Lab (English)

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10

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4

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e0121396

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copyright license

Creative Commons Attribution 4.0 International

15 April 2015

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April 2022 Public Data File from Crossref

copyright status

0 references

GSVD comparison of patient-matched normal and tumor aCGH profiles reveals global copy-number alterations predicting glioblastoma multiforme survival

1 reference

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19 March 2017

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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Identifiers

10.1371/JOURNAL.PONE.0121396

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2015PLoSO..1021396S

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OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

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Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

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