(Q27902315)

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BioTriangle: a web-accessible platform for generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions

scientific article (publication date: 2016)

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BioTriangle: a web-accessible platform for generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions (English)

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9

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7

object named as

Ai-Ping Lu

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author name string

Jie Dong

1

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Zhi-Jiang Yao

2

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Ming Wen

3

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Min-Feng Zhu

4

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Ning-Ning Wang

5

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Hong-Yu Miao

6

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Wen-Bin Zeng

8

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Dong-Sheng Cao

9

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publication date

2016

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Journal of Cheminformatics

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8

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1

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34

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copyright license

Creative Commons Attribution 4.0 International

21 June 2016

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April 2022 Public Data File from Crossref

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Chemically Aware Model Builder (camb): an R package for property and bioactivity modelling of small molecules

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20 March 2017

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20 March 2017

Open Babel: An open chemical toolbox

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DrugBank 3.0: a comprehensive resource for 'omics' research on drugs

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20 March 2017

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20 March 2017

TTD: Therapeutic Target Database

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20 March 2017

DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions

1 reference

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20 March 2017

KEGG: kyoto encyclopedia of genes and genomes

1 reference

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20 March 2017

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1 reference

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20 March 2017

ChEMBL: a large-scale bioactivity database for drug discovery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915156

20 March 2017

Cell-PLoc: a package of Web servers for predicting subcellular localization of proteins in various organisms

1 reference

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20 March 2017

Similarity-based virtual screening using 2D fingerprints

1 reference

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20 March 2017

Recent Developments of the Chemistry Development Kit (CDK) - An Open-Source Java Library for Chemo- and Bioinformatics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915156

20 March 2017

iGPCR-drug: a web server for predicting interaction between GPCRs and drugs in cellular networking

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915156

20 March 2017

Network medicine: a network-based approach to human disease

1 reference

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7 April 2017

Human Protein Reference Database--2009 update

1 reference

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7 April 2017

The large-scale organization of metabolic networks

1 reference

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1 reference

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Drug target identification using side-effect similarity

1 reference

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Rational siRNA design for RNA interference

1 reference

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7 April 2017

BIND: the Biomolecular Interaction Network Database

1 reference

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7 April 2017

Elucidating Compound Mechanism of Action by Network Perturbation Analysis.

1 reference

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29 September 2017

How computational models can help unlock biological systems

1 reference

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protr/ProtrWeb: R package and web server for generating various numerical representation schemes of protein sequences.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915156

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repDNA: a Python package to generate various modes of feature vectors for DNA sequences by incorporating user-defined physicochemical properties and sequence-order effects

1 reference

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A rotation-translation invariant molecular descriptor of partial charges and its use in ligand-based virtual screening

1 reference

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1 reference

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29 September 2017

ChemoPy: freely available python package for computational biology and chemoinformatics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915156

29 September 2017

propy: a tool to generate various modes of Chou's PseAAC.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915156

29 September 2017

iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915156

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PTMcode: a database of known and predicted functional associations between post-translational modifications in proteins

1 reference

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CSB: a Python framework for structural bioinformatics

1 reference

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29 September 2017

Deciphering a global network of functionally associated post-translational modifications

1 reference

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1 reference

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Predicting human nucleosome occupancy from primary sequence

1 reference

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nuScore: a web-interface for nucleosome positioning predictions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915156

29 September 2017

Proteochemometric modeling of HIV protease susceptibility

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915156

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1 reference

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4915156

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PROFEAT: a web server for computing structural and physicochemical features of proteins and peptides from amino acid sequence

1 reference

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1 reference

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SVM-Prot: Web-based support vector machine software for functional classification of a protein from its primary sequence

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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2D QSAR modeling and preliminary database searching for dopamine transporter inhibitors using genetic algorithm variable selection of Molconn Z descriptors.

1 reference

https://api.crossref.org/works/10.1186%2FS13321-016-0146-2

21 January 2018

Rcpi: R/Bioconductor package to generate various descriptors of proteins, compounds and their interactions.

1 reference

https://api.crossref.org/works/10.1186%2FS13321-016-0146-2

21 January 2018

Predicting the in vivo signature of human gene regulatory sequences

1 reference

https://api.crossref.org/works/10.1186%2FS13321-016-0146-2

21 January 2018

iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition

1 reference

https://api.crossref.org/works/10.1186%2FS13321-016-0146-2

21 January 2018

Proteochemometrics modeling of the interaction of amine G-protein coupled receptors with a diverse set of ligands

1 reference

https://api.crossref.org/works/10.1186%2FS13321-016-0146-2

21 January 2018

Proteochemometrics: A Tool for Modeling the Molecular Interaction Space

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3 January 2022

Identifiers

10.1186/S13321-016-0146-2

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

DBLP publication ID

journals/jcheminf/DongYWZWMLZC16

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s13321-016-0146-2

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

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