(Q27939024)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23599000%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

title

A novel role for Sem1 and TREX-2 in transcription involves their impact on recruitment and H2B deubiquitylation activity of SAGA (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23599000%20AND%20SRC:MED&resulttype=core&format=json

Proteasome regulatory particle lid subunit SEM1 YDR363W-A

29 February 2020

main subject

1 reference

GOA release 2020-03-11

author

Pau Pascual-García

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23599000%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Tineke L Lenstra

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23599000%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Susana Rodriguez-Navarro

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23599000%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

author name string

Encar García-Oliver

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23599000%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Varinia García-Molinero

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23599000%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Frank C P Holstege

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23599000%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

language of work or name

English

0 references

publication date

17 April 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23599000%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

published in

Nucleic Acids Research

2 references

1 December 2016

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23599000%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

volume

41

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23599000%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

issue

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23599000%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

page(s)

5655-5668

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23599000%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 3.0 Unported

29 February 2020

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/3675487

inferred from PubMed Central ID database lookup

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Structural Basis for Assembly and Activation of the Heterotetrameric SAGA Histone H2B Deubiquitinase Module

20 March 2017

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Structural Insights into the Assembly and Function of the SAGA Deubiquitinating Module

20 March 2017

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Sus1, Cdc31, and the Sac3 CID Region Form a Conserved Interaction Platform that Promotes Nuclear Pore Association and mRNA Export

20 March 2017

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Yeast Sgf73/Ataxin-7 serves to anchor the deubiquitination module into both SAGA and Slik(SALSA) HAT complexes

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A genetic interaction map of RNA-processing factors reveals links between Sem1/Dss1-containing complexes and mRNA export and splicing

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Yeast Ataxin-7 links histone deubiquitination with gene gating and mRNA export

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A TFTC/STAGA module mediates histone H2A and H2B deubiquitination, coactivates nuclear receptors, and counteracts heterochromatin silencing

20 March 2017

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Histone crosstalk between H2B monoubiquitination and H3 methylation mediated by COMPASS.

20 March 2017

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The mRNA export factor Sus1 is involved in Spt/Ada/Gcn5 acetyltransferase-mediated H2B deubiquitinylation through its interaction with Ubp8 and Sgf11.

20 March 2017

1 reference

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SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelope

20 March 2017

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Role of the regulatory domain of protein kinase D2 in phorbol ester binding, catalytic activity, and nucleocytoplasmic shuttling

20 March 2017

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Simultaneous recruitment of coactivators by Gcn4p stimulates multiple steps of transcription in vivo

20 March 2017

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Mot1-mediated control of transcription complex assembly and activity

20 March 2017

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Histone H2B ubiquitylation is associated with elongating RNA polymerase II

20 March 2017

1 reference

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Sem1, the yeast ortholog of a human BRCA2-binding protein, is a component of the proteasome regulatory particle that enhances proteasome stability

20 March 2017

1 reference

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Ataxin-7 is a subunit of GCN5 histone acetyltransferase-containing complexes

20 March 2017

1 reference

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Sus1, a functional component of the SAGA histone acetylase complex and the nuclear pore-associated mRNA export machinery

20 March 2017

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Applicability of tandem affinity purification MudPIT to pathway proteomics in yeast

20 March 2017

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Transcriptional activation via sequential histone H2B ubiquitylation and deubiquitylation, mediated by SAGA-associated Ubp8.

20 March 2017

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Nab2p and the Thp1p-Sac3p complex functionally interact at the interface between transcription and mRNA metabolism

20 March 2017

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Functional organization of the yeast proteome by systematic analysis of protein complexes

20 March 2017

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Nab2p is required for poly(A) RNA export in Saccharomyces cerevisiae and is regulated by arginine methylation via Hmt1p

20 March 2017

1 reference

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Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae

20 March 2017

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Purification and properties of galactokinase from Saccharomyces cerevisiae

20 March 2017

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20 March 2017

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SAGA is an essential in vivo target of the yeast acidic activator Gal4p

20 March 2017

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20 March 2017

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A negative feedback loop at the nuclear periphery regulates GAL gene expression

29 September 2017

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29 September 2017

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29 September 2017

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The specificity and topology of chromatin interaction pathways in yeast

29 September 2017

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Decoding the trans-histone crosstalk: methods to analyze H2B ubiquitination, H3 methylation and their regulatory factors.

29 September 2017

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Sem1: a versatile "molecular glue"?

29 September 2017

1 reference

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A genetic and molecular toolbox for analyzing histone ubiquitylation and sumoylation in yeast.

29 September 2017

1 reference

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Linking gene regulation to mRNA production and export.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3675487

Functional interactions between nucleoporins and chromatin

29 September 2017

1 reference

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The role of deubiquitinating enzymes in chromatin regulation.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3675487

The interface between transcription and mRNP export: from THO to THSC/TREX-2.

29 September 2017

1 reference

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The nuclear pore complex: bridging nuclear transport and gene regulation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3675487

Histone H2B ubiquitination and beyond: Regulation of nucleosome stability, chromatin dynamics and the trans-histone H3 methylation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3675487

Inducible gene expression: diverse regulatory mechanisms

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3675487

PCI complexes: Beyond the proteasome, CSN, and eIF3 Troika.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3675487

Histone H2BK123 monoubiquitination is the critical determinant for H3K4 and H3K79 trimethylation by COMPASS and Dot1.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3675487

Insights into SAGA function during gene expression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3675487

Sem1 is a functional component of the nuclear pore complex-associated messenger RNA export machinery

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3675487

Sus1 is recruited to coding regions and functions during transcription elongation in association with SAGA and TREX2.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3675487

Systems for applied gene control in Saccharomyces cerevisiae.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3675487

Nap1 links transcription elongation, chromatin assembly, and messenger RNP complex biogenesis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3675487

Histone H2B ubiquitylation controls processive methylation but not monomethylation by Dot1 and Set1.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3675487

In control: systematic assessment of microarray performance

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3675487

Components of the SAGA histone acetyltransferase complex are required for repressed transcription of ARG1 in rich medium

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3675487

Yra1p, a conserved nuclear RNA-binding protein, interacts directly with Mex67p and is required for mRNA export

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3675487

Gene gating: a hypothesis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3675487

Two systems of glucose repression of the GAL1 promoter in Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3675487

A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3675487

Multiple faces of the SAGA complex

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3675487

Adaptable gene-specific dye bias correction for two-channel DNA microarrays

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3675487

Keeping mRNPs in check during assembly and nuclear export.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3675487

Getting to the gate: crystallization of a Sac3(CID):Sus1:Cdc31 complex

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3675487

A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3675487

Proteasomal ATPases link ubiquitylation of histone H2B to methylation of histone H3.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3675487

Connecting the transcription site to the nuclear pore: a multi-tether process that regulates gene expression

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23599000

12 December 2020

inferred from PubMed ID database lookup

Structural basis for the assembly and disassembly of mRNA nuclear export complexes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23599000

12 December 2020

inferred from PubMed ID database lookup

Dss1 associating with the proteasome functions in selective nuclear mRNA export in yeast

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23599000

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/NAR/GKT272

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23599000%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23599000%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

2 references

1 December 2016

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23599000%20AND%20SRC:MED&resulttype=core&format=json