protein family (E233)

language code	label	description	aliases	edit
en	protein family	general schema describing InterPro protein families		edit
check entities against this Schemaedit
PREFIX wd: <http://www.wikidata.org/entity/>
PREFIX wdt: <http://www.wikidata.org/prop/direct/>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
PREFIX p: <http://www.wikidata.org/prop/>
PREFIX ps: <http://www.wikidata.org/prop/statement/>
PREFIX prov: <http://www.w3.org/ns/prov#>
PREFIX pq: <http://www.wikidata.org/prop/qualifier/>
PREFIX pr:  <http://www.wikidata.org/prop/reference/>

# Example query: select * { ?x wdt:P31 wd:Q417841 } LIMIT 5

start = @<#proteinFamily>

<#proteinFamily> EXTRA p:P31 p:P279 {
  p:P31 @<#P31_instance_of_protein_family> ;

  p:P2926 @<#P2926_interpro_id> ;                # exactly one InterPro ID
  wdt:P3519 LITERAL? ;                               # optionally one Pfam ID
  p:P279 @<#P279_subclass_of_protein_family>+ ;  # one or more subclass stmts
  p:P680 @<#P680_molecular_function>* ;          # zero or more molecular function stmts
}

## Statement details
<#P31_instance_of_protein_family> {
  ps:P31 [ wd:Q417841 ] ; # protein family
  prov:wasDerivedFrom @<#interpro-reference-id> ;
}

<#P2926_interpro_id> {
  ps:P2926 xsd:string;
  prov:wasDerivedFrom @<#interpro-reference-name> ;
}

<#P279_subclass_of_protein_family> {
  ( ps:P279 wd:Q8054 ;                    # subclass of [P279] protein [Q80548]
    |
    ps:P279 { wdt:P31 wd:Q417841 } );     # or any protein family
  prov:wasDerivedFrom IRI+ ;
}

<#P680_molecular_function> {
  ps:P680  { wdt:P31 [wd:Q14860489] } ; # mol. function value is a Gene Ontology function item
  pq:P4390 { wdt:P31 [wd:Q60817979] } ; # qualifier: mapping type with any SKOS generic mapping relation
  prov:wasDerivedFrom IRI+ ;
}

## REFERENCES
<#interpro-reference-id> {               # reference to an InterPro release, and an ID in that release
  pr:P248   { wdt:P629 [wd:Q3047275] } ; # stated in [P248] edition of [P629] InterPro [Q3047275]
  pr:P2926  xsd:string ;                 # InterPro identifier
}

<#interpro-reference-name> {             # reference to an InterPro release, and the entity name used
  pr:P248   { wdt:P629 [wd:Q3047275] } ; # stated in [P248] edition of [P629] InterPro [Q3047275]
  pr:P1810  xsd:string ;                 # entity name in InterPro release
}