Gene Wiki bot for the Disease Ontology (E323)

language code	label	description	aliases	edit
en	Gene Wiki bot for the Disease Ontology	Disease Ontology on Wikidata as monitored and maintained by Gene Wiki bots		edit
check entities against this Schemaedit
PREFIX prov: <http://www.w3.org/ns/prov#>
PREFIX p: <http://www.wikidata.org/prop/>
PREFIX ps: <http://www.wikidata.org/prop/statement/>
PREFIX obo: <http://purl.obolibrary.org/obo/> 
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
PREFIX wd: <http://www.wikidata.org/entity/>
PREFIX wdt: <http://www.wikidata.org/prop/direct/>
PREFIX pr: <http://www.wikidata.org/prop/reference/>
PREFIX identorg: <http://identifiers.org/doid/>
PREFIX orphanet: <http://www.orpha.net/ORDO/Orphanet>
PREFIX icd: <https://icd.who.int/>
PREFIX umls: <http://linkedlifedata.com/resource/umls>
start=@<#gene-wiki-disease-item>

<#gene-wiki-disease-item>
   {
    p:P279 @<#P279_subclassof>+ ;
    p:P279 . * ;
    p:P2888 @<#P2888_exactmatch>+ ;
    p:P780 @<#P780_symptoms>* ;
  
    # Identifiers
    p:P699       @<#P699_disease_ontology> ;
    p:P492      @<#P492_omim_id>* ;
   p:P1550     @<#P1550_orphanet_id>* ;
   p:P1748     @<#P1748_nci_theraurus_id>* ;
    p:P4229     @<#P4229_icd10-cm>* ;
    p:P5806		@<#P5806-snomed-ct>* ;
} 

## Shapes describing statements in detail.
<#P279_subclassof> {
   ps:P279 [wd:~] ;
       prov:wasDerivedFrom 	@<#disease-ontology-reference> OR 
                            @<#mondo-disease-reference> OR @<#reference> + ;
}
    
<#P492_omim_id> {
   ps:P492 xsd:string ;    
}

<#P699_disease_ontology> {
   ps:P699 xsd:string ;
   prov:wasDerivedFrom @<#disease-ontology-reference> 
                       OR @<#mondo-disease-reference> OR @<#reference>  + ;   
}
      
<#P780_symptoms>  {
   ps:P780 {} ; # TODO create and import EntitySchema for the Symptom Ontology  
}

<#P1550_orphanet_id> {
   ps:P1550 xsd:string ;  
}

<#P1748_nci_theraurus_id> {
   ps:P1748 xsd:string ;
}
            
<#P2888_exactmatch>   {
  ps:P2888 [obo:~ identorg:~ orphanet:~ icd:~ umls:~ ]  ;
}

<#P4229_icd10-cm>  {
  ps:P4229 xsd:string ; 
  prov:wasDerivedFrom 	@<#disease-ontology-reference>
  			OR @<#mondo-disease-reference> OR @<#reference> + ;
}

<#P5270_mondo_id> {
   ps:P5270 xsd:string ;
   prov:wasDerivedFrom @<#disease-ontology-reference> 
                       OR @<#mondo-disease-reference> OR @<#reference> + ;   
}

<#P5806-snomed-ct> {
   ps:P5806 xsd:string ;
   prov:wasDerivedFrom @<#disease-ontology-reference> 
                       OR @<#mondo-disease-reference> OR @<#reference> + ;
}

## References
<#reference> {}

<#disease-ontology-reference> { # reference to a term from the disease ontology term
  pr:P248   [ wd:Q5282129 ] ; # stated in [P248] Disease ontology
  pr:P699   xsd:string ; # Disease Ontology ID
  pr:P813    xsd:dateTime ; # Date of retrieval
}


<#identifiers-org-reference> { # reference to a identifiers.org
  pr:P248   [ wd:Q16335166 ] ; # stated in [P248] identifiers.org [Q16335166] ;
  pr:P854   [<https://registry.identifiers.org/registry/doid>] ;
}

<#mondo-disease-reference> { # reference to a term from the MonDo ontology
  pr:P248   [ wd:Q27468140 wd:Q55345445 ] ; # stated in [P248] Mondo disease ontology [Q27468140]
  pr:P5270  xsd:string ; # Mondo ID
  pr:P813    xsd:dateTime ; # Date of retrieval
}

<#symptom-ontology-reference> { # reference to a term from the Symptom Ontology
  pr:P248   [ wd:Q5282129 ] ; # stated in [P248] Symptom ontology [Q27468140]
  pr:P8656   xsd:string ; # Symptom Ontology ID
  pr:P813    xsd:dateTime ; # Date of retrieval
}