Gene Wiki bot for the Gene Ontology (E328)

language code	label	description	aliases	edit
en	Gene Wiki bot for the Gene Ontology	Gene Ontology on Wikidata as monitored and maintained by Gene Wiki bots		edit

check entities against this Schemaedit

PREFIX p: <http://www.wikidata.org/prop/>
PREFIX ps: <http://www.wikidata.org/prop/statement/>
PREFIX pr: <http://www.wikidata.org/prop/reference/>
PREFIX wd: <http://www.wikidata.org/entity/>
prefix wdt: <http://www.wikidata.org/prop/direct/>
PREFIX prov: <http://www.w3.org/ns/prov#>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
PREFIX go: <http://purl.obolibrary.org/obo/GO_>

BASE <http://www.wikidata.org/entity/> 

# Example query: SELECT DISTINCT ?go WHERE {?go wdt:P686 ?goid .} LIMIT 5

start = @<gene-ontology-term>

<gene-ontology-term> EXTRA p:P31 p:P279  p:P361 {
   p:P31 @<P31_instance_of> ;
   p:P279 @<P279_subclass_of>* ;
   p:P361 @<P361_part_of>* ;
   p:P2888 @<P2888_exact_match>+ ;

   # identifiers
   p:P686 @<P686_gene_ontology_id> ;
}

<P31_instance_of> {
   ps:P31 [
     wd:Q2996394  # biological process
     wd:Q14860489	# molecular function
     wd:Q5058355  # cellular component
     ] ;
   prov:wasDerivedFrom @<gene_ontology_reference>
}

<P279_subclass_of> {
   ps:P279 [wd:~] ;
   prov:wasDerivedFrom @<gene_ontology_reference> ;
}

<P361_part_of> {
   ps:P361 [wd:~]  ;
   prov:wasDerivedFrom @<gene_ontology_reference> ;
}

<P686_gene_ontology_id> {
   ps:P686 /GO:[0-9]+/ ;
   prov:wasDerivedFrom @<gene_ontology_reference> ;
}

<P2888_exact_match> {
   ps:P2888 [go:~] ;
   prov:wasDerivedFrom @<gene_ontology_reference> ;
}

<go_parent> {
   wdt:P686 /GO:[0-9]+/ ;
} 

# references
<gene_ontology_reference> {
   pr:P248 [wd:~] ;
   pr:P813 xsd:dateTime ;
   pr:P686 /GO:[0-9]+/ ;
}