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A protein interaction framework for human mRNA degradation
scientific article
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scholarly article
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title
A protein interaction framework for human mRNA degradation
(English)
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main subject
Zinc finger protein 408
1 reference
stated in
GOA release 2020-03-11
Exosome component 8
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stated in
GOA release 2020-03-11
identical protein binding
1 reference
stated in
GOA release 2020-03-11
author
Ben Lehner
object named as
Ben Lehner
series ordinal
1
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author name string
Christopher M Sanderson
series ordinal
2
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language of work or name
English
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publication date
July 2004
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published in
Genome Research
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volume
14
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page(s)
1315-23
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issue
7
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cites work
Analysis of a high-throughput yeast two-hybrid system and its use to predict the function of intracellular proteins encoded within the human MHC class III region
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The human LSm1-7 proteins colocalize with the mRNA-degrading enzymes Dcp1/2 and Xrnl in distinct cytoplasmic foci
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19 March 2017
Human Dcp2: a catalytically active mRNA decapping enzyme located in specific cytoplasmic structures
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19 March 2017
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
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19 March 2017
Protein-protein interactions between human exosome components support the assembly of RNase PH-type subunits into a six-membered PNPase-like ring
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19 March 2017
Identification of a human decapping complex associated with hUpf proteins in nonsense-mediated decay
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19 March 2017
The hDcp2 protein is a mammalian mRNA decapping enzyme
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PubMed Central
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19 March 2017
The scavenger mRNA decapping enzyme DcpS is a member of the HIT family of pyrophosphatases
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=442147
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19 March 2017
The mammalian exosome mediates the efficient degradation of mRNAs that contain AU-rich elements
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19 March 2017
AU binding proteins recruit the exosome to degrade ARE-containing mRNAs
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PubMed Central
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19 March 2017
Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon
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PubMed Central
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19 March 2017
Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach
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19 March 2017
Identification and characterization of human orthologues to Saccharomyces cerevisiae Upf2 protein and Upf3 protein (Caenorhabditis elegans SMG-4)
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19 March 2017
Cap-dependent deadenylation of mRNA
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PubMed Central
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19 March 2017
A doughnut-shaped heteromer of human Sm-like proteins binds to the 3'-end of U6 snRNA, thereby facilitating U4/U6 duplex formation in vitro
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PubMed Central
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19 March 2017
The yeast exosome and human PM-Scl are related complexes of 3' --> 5' exonucleases
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PubMed Central
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19 March 2017
Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin
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PubMed Central
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19 March 2017
Identification of novel M phase phosphoproteins by expression cloning
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19 March 2017
A protein interaction map of Drosophila melanogaster
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19 March 2017
Nonsense-mediated mRNA decay in mammalian cells involves decapping, deadenylating, and exonucleolytic activities
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19 March 2017
An NMD pathway in yeast involving accelerated deadenylation and exosome-mediated 3'-->5' degradation
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19 March 2017
Decapping and Decay of Messenger RNA Occur in Cytoplasmic Processing Bodies
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=442147
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19 March 2017
Homomeric ring assemblies of eukaryotic Sm proteins have affinity for both RNA and DNA. Crystal structure of an oligomeric complex of yeast SmF
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PubMed Central
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19 March 2017
Quality control of mRNA 3'-end processing is linked to the nuclear exosome
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PubMed Central
reference URL
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19 March 2017
Genome-wide protein interaction screens reveal functional networks involving Sm-like proteins
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PubMed Central
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19 March 2017
Saccharomyces cerevisiae RAI1 (YGL246c) is homologous to human DOM3Z and encodes a protein that binds the nuclear exoribonuclease Rat1p
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PubMed Central
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19 March 2017
Functions of Lsm proteins in mRNA degradation and splicing
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PubMed Central
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19 March 2017
Protein interaction mapping in C. elegans using proteins involved in vulval development
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PubMed Central
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19 March 2017
The 3' to 5' degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3' to 5' exonucleases of the exosome complex
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=442147
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19 March 2017
Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=442147
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19 March 2017
A map of the interactome network of the metazoan C. elegans
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=442147
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7 April 2017
Comparative assessment of large-scale data sets of protein-protein interactions
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=442147
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7 April 2017
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=442147
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7 April 2017
The cap-to-tail guide to mRNA turnover
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=442147
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7 April 2017
The jury is out on "guilt by association" trials
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27 September 2017
mRNA surveillance: the perfect persist
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27 September 2017
Ubiquitin-dependent mechanism regulates rapid turnover of AU-rich cytokine mRNAs
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27 September 2017
Running rings around RNA: a superfamily of phosphate-dependent RNases.
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27 September 2017
Functional link between the mammalian exosome and mRNA decapping
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27 September 2017
A complex prediction: three-dimensional model of the yeast exosome.
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30 May 2018
The roles of intersubunit interactions in exosome stability.
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29 November 2018
BioLayout--an automatic graph layout algorithm for similarity visualization.
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29 November 2018
Life after transcription--revisiting the fate of messenger RNA
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1101/GR.2122004
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PMCID
442147
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PubMed ID
15231747
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ResearchGate publication ID
8476502
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