(Q24535523)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16314307%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

title

Footprinting of mammalian promoters: use of a CpG DNA methyltransferase revealing nucleosome positions at a single molecule level (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16314307%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16314307%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

Shinwu Jeong

3

0 references

Daniel J Weisenberger

6

object named as

Daniel J Weisenberger

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16314307%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

author name string

Mehrnaz Fatemi

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16314307%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

Martha M Pao

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16314307%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

Einav Nili Gal-Yam

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16314307%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

Peter A Jones

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16314307%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

language of work or name

English

0 references

publication date

27 November 2005

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16314307%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16314307%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

volume

33

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16314307%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

page(s)

e176

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16314307%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

issue

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16314307%20AND%20SRC:MED&resulttype=core&format=json

Comprehensive analysis of CpG islands in human chromosomes 21 and 22

9 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

Regulation of p16CDKN2 expression and its implications for cell immortalization and senescence

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

Alteration of nucleosome structure as a mechanism of transcriptional regulation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

ISWI complexes in Saccharomyces cerevisiae

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

Chromatin remodeling by RNA polymerases

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

Continuous zebularine treatment effectively sustains demethylation in human bladder cancer cells

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

Chromatin remodeling by ATP-dependent molecular machines.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

An epigenetic road map for histone lysine methylation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

Altered chromatin structure associated with methylation-induced gene silencing in cancer cells: correlation of accessibility, methylation, MeCP2 binding and acetylation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

Histone methylation versus histone acetylation: new insights into epigenetic regulation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

The role of DNA methylation in expression of the p19/p16 locus in human bladder cancer cell lines.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

Aberrant silencing of the CpG island-containing human O6-methylguanine DNA methyltransferase gene is associated with the loss of nucleosome-like positioning

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

In vitro reconstitution and analysis of mononucleosomes containing defined DNAs and proteins

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

Probing DNA-protein interactions in vitro with the CpG DNA methyltransferase

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

ATP-dependent nucleosome disruption at a heat-shock promoter mediated by binding of GAGA transcription factor.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

Sp1 sites in the mouse aprt gene promoter are required to prevent methylation of the CpG island

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

Nucleosome positioning on the MMTV LTR results from the frequency-biased occupancy of multiple frames

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

A positive role for nucleosome mobility in the transcriptional activity of chromatin templates: restriction by linker histones.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

27 September 2017

CpG islands and genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

Nucleosomes inhibit the initiation of transcription but allow chain elongation with the displacement of histones

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

Nucleosome loss activates yeast downstream promoters in vivo

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

CpG islands as gene markers in the human genome.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

Removal of promoter nucleosomes by disassembly rather than sliding in vivo.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

Mapping chromatin structure in vivo using DNA methyltransferases.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

Maintenance DNA methylation of nucleosome core particles.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

Nucleosomes unfold completely at a transcriptionally active promoter.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

Histone H3-lysine 9 methylation is associated with aberrant gene silencing in cancer cells and is rapidly reversed by 5-aza-2'-deoxycytidine

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

The endothelin receptor B (EDNRB) promoter displays heterogeneous, site specific methylation patterns in normal and tumor cells

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1292996

Clusters of CpG dinucleotides implicated by nuclease hypersensitivity as control elements of housekeeping genes

29 November 2018

1 reference

12 December 2020

Reconstitution of chromatin from purified components

1 reference

12 December 2020

A nucleosome core is transferred out of the path of a transcribing polymerase

1 reference

12 December 2020

A histone octamer can step around a transcribing polymerase without leaving the template

1 reference

12 December 2020

Overcoming a nucleosomal barrier to transcription

1 reference

12 December 2020

Mapping of nucleosome positions

1 reference

12 December 2020

Chromatin structure mapping in vivo using methyltransferases

1 reference

12 December 2020

Coordination of PIC Assembly and Chromatin Remodeling During Differentiation-Induced Gene Activation

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GNI180

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16314307%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16314307%20AND%20SRC:MED&resulttype=core&format=json

9 January 2020

1 reference