(Q24620643)

1

0 references

Gloria A Brar

2

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Silvia Rouskin

3

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Anna M McGeachy

Current protocols in molecular biology

4

0 references

Jonathan S Weissman

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language of work or name

English

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publication date

July 2013

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published in

1 reference

The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments

PubMed

volume

Chapter 4

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page(s)

Unit 4.18

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Differential expression analysis for sequence count data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Biases in Illumina transcriptome sequencing caused by random hexamer priming

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Differentiating protein-coding and noncoding RNA: challenges and ambiguities

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Accurate whole human genome sequencing using reversible terminator chemistry

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

The transcriptional landscape of the yeast genome defined by RNA sequencing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Mapping and quantifying mammalian transcriptomes by RNA-Seq

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Altering chemosensitivity by modulating translation elongation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Global analysis of protein expression in yeast

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

High-resolution view of the yeast meiotic program revealed by ribosome profiling

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Regulation of translation initiation in eukaryotes: mechanisms and biological targets

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Global quantification of mammalian gene expression control

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Polypeptide Chain Initiation: Nucleotide Sequences of the Three Ribosomal Binding Sites in Bacteriophage R17 RNA

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Inhibition of Translation in Eukaryotic Systems by Harringtonine

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

A translational profiling approach for the molecular characterization of CNS cell types

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Exploring the new world of the genome with DNA microarrays

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Genome-wide search for novel human uORFs and N-terminal protein extensions using ribosomal footprinting

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Balanced codon usage optimizes eukaryotic translational efficiency

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Structural bias in T4 RNA ligase-mediated 3'-adapter ligation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Primary role for endoplasmic reticulum-bound ribosomes in cellular translation identified by ribosome profiling

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Selective ribosome profiling reveals the cotranslational chaperone action of trigger factor in vivo

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Wobble base-pairing slows in vivo translation elongation in metazoans

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Computational methods for transcriptome annotation and quantification using RNA-seq

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Improving RNA-Seq expression estimates by correcting for fragment bias

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Genome-wide translational profiling by ribosome footprinting

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Comprehensive comparative analysis of strand-specific RNA sequencing methods

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Modeling non-uniformity in short-read rates in RNA-Seq data

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Inhibition of eukaryotic translation elongation by cycloheximide and lactimidomycin

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Cell-type-specific isolation of ribosome-associated mRNA from complex tissues

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Isolation of polysome-bound mRNA from solid tissues amenable for RT-PCR and profiling experiments.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Ribosome pausing and stacking during translation of a eukaryotic mRNA.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Translation's coming of age.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3775365

Extensive translation of small Open Reading Frames revealed by Poly-Ribo-Seq

30 May 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

Ribosome profiling shows that miR-430 reduces translation before causing mRNA decay in zebrafish

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

Selective ribosome profiling as a tool for studying the interaction of chaperones and targeting factors with nascent polypeptide chains and ribosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

Detecting actively translated open reading frames in ribosome profiling data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

Ribosome profiling reveals resemblance between long non-coding RNAs and 5' leaders of coding RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

Efficient biotinylation and single-step purification of tagged transcription factors in mammalian cells and transgenic mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

Translation inhibitors cause abnormalities in ribosome profiling experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

Mammalian microRNAs predominantly act to decrease target mRNA levels

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

The translational landscape of mTOR signalling steers cancer initiation and metastasis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

Understanding Biases in Ribosome Profiling Experiments Reveals Signatures of Translation Dynamics in Yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

Ribosome profiling reveals pervasive translation outside of annotated protein-coding genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

Principles of ER cotranslational translocation revealed by proximity-specific ribosome profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

Small peptides switch the transcriptional activity of Shavenbaby during Drosophila embryogenesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

Limitations and possibilities of small RNA digital gene expression profiling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

Observation of dually decoded regions of the human genome using ribosome profiling data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

High-throughput sequencing technologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

Decoding human cytomegalovirus

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

RNA-Seq: a revolutionary tool for transcriptomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

Targeting and plasticity of mitochondrial proteins revealed by proximity-specific ribosome profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

A hierarchical network controls protein translation during murine embryonic stem cell self-renewal and differentiation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23821443

12 December 2020

inferred from PubMed ID database lookup

Rapid purification of highly active ribosomes from Escherichia coli

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23821443

12 December 2020

inferred from PubMed ID database lookup

Purification and concentration of DNA from aqueous solutions

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

7 January 2021

inferred from DOI database lookup

Separation of small DNA fragments by conventional gel electrophoresis

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

7 January 2021

inferred from DOI database lookup

Purification of Oligonucleotides Using Denaturing Polyacrylamide Gel Electrophoresis

1 reference

https://api.crossref.org/works/10.1002%2F0471142727.MB0418S103

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1002/0471142727.MB0418S103

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

4883545

OpenCitations bibliographic resource ID

4883545

1 reference