Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q24646281)
Watch
English
PARTS: probabilistic alignment for RNA joinT secondary structure prediction
scientific article
In more languages
default for all languages
No label defined
No description defined
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
2367733
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18304945%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 January 2020
title
PARTS: probabilistic alignment for RNA joinT secondary structure prediction
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
2367733
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18304945%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 January 2020
author
Gaurav Sharma
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
2367733
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18304945%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 January 2020
author name string
Arif Ozgun Harmanci
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
2367733
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18304945%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 January 2020
David H Mathews
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
2367733
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18304945%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 January 2020
language of work or name
English
0 references
publication date
26 February 2008
1 reference
stated in
Europe PubMed Central
PMC publication ID
2367733
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18304945%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 January 2020
published in
Nucleic Acids Research
1 reference
stated in
Europe PubMed Central
PMC publication ID
2367733
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18304945%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 January 2020
volume
36
1 reference
stated in
Europe PubMed Central
PMC publication ID
2367733
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18304945%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 January 2020
issue
7
1 reference
stated in
Europe PubMed Central
PMC publication ID
2367733
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18304945%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 January 2020
page(s)
2406-2417
1 reference
stated in
Europe PubMed Central
PMC publication ID
2367733
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18304945%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 January 2020
cites work
Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367733
retrieved
7 April 2017
Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367733
retrieved
7 April 2017
Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367733
retrieved
7 April 2017
Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367733
retrieved
7 April 2017
Accelerated probabilistic inference of RNA structure evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367733
retrieved
7 April 2017
Fast and reliable prediction of noncoding RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367733
retrieved
7 April 2017
Abstract shapes of RNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367733
retrieved
7 April 2017
Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367733
retrieved
7 April 2017
Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367733
retrieved
7 April 2017
Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367733
retrieved
7 April 2017
Mfold web server for nucleic acid folding and hybridization prediction
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367733
retrieved
7 April 2017
The Ribonuclease P Database
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367733
retrieved
7 April 2017
Non–coding RNA genes and the modern RNA world
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367733
retrieved
7 April 2017
Vienna RNA secondary structure server
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367733
retrieved
7 April 2017
CONTRAfold: RNA secondary structure prediction without physics-based models
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367733
retrieved
7 April 2017
Secondary structure prediction for aligned RNA sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367733
retrieved
7 April 2017
The equilibrium partition function and base pair binding probabilities for RNA secondary structure
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367733
retrieved
7 April 2017
Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367733
retrieved
7 April 2017
Compilation of tRNA sequences and sequences of tRNA genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367733
retrieved
7 April 2017
Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367733
retrieved
27 September 2017
A set of nearest neighbor parameters for predicting the enthalpy change of RNA secondary structure formation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367733
retrieved
27 September 2017
Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367733
retrieved
27 September 2017
Computational genomics of noncoding RNA genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367733
retrieved
27 September 2017
5S ribosomal RNA database Y2K
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367733
retrieved
27 September 2017
Simultaneous alignment and structure prediction of three RNA sequences.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367733
retrieved
28 November 2018
Efficient parameter estimation for RNA secondary structure prediction
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367733
retrieved
28 November 2018
Probabilistic structural alignment of RNA sequences
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1093%2FNAR%2FGKN043
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1093/NAR/GKN043
1 reference
stated in
Europe PubMed Central
PMC publication ID
2367733
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18304945%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 January 2020
PMC publication ID
2367733
1 reference
stated in
Europe PubMed Central
PMC publication ID
2367733
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18304945%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 January 2020
PubMed publication ID
18304945
1 reference
stated in
Europe PubMed Central
PMC publication ID
2367733
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18304945%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 January 2020
ResearchGate publication ID
5547419
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit