(Q24803388)

4

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Michael B. Eisen

5

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Manolis Kellis

3

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author name string

Alan M Moses

1

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Derek Y Chiang

https://scigraph.springernature.com/pub.10.1186/1471-2148-3-19

2

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language of work or name

English

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publication date

28 August 2003

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published in

BMC Evolutionary Biology

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volume

3

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page(s)

19

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issue

1

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exact match

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cites work

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7 April 2017

The Protein Data Bank

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Cluster analysis and display of genome-wide expression patterns

7 April 2017

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Sequencing and comparison of yeast species to identify genes and regulatory elements

7 April 2017

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Crystal structure of the yeast MATalpha2/MCM1/DNA ternary complex

7 April 2017

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PAML: a program package for phylogenetic analysis by maximum likelihood

7 April 2017

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7 April 2017

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Fitting a mixture model by expectation maximization to discover motifs in biopolymers

7 April 2017

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Functional discovery via a compendium of expression profiles

7 April 2017

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DNA-binding specificity of Mcm1: operator mutations that alter DNA-bending and transcriptional activities by a MADS box protein

7 April 2017

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DNA binding sites: representation and discovery

7 April 2017

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Systematic determination of genetic network architecture

7 April 2017

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Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

7 April 2017

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Distinguishing regulatory DNA from neutral sites

7 April 2017

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The Stanford Microarray Database: data access and quality assessment tools

28 September 2017

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An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments

28 September 2017

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Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover

28 September 2017

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Genome-wide analysis of gene expression regulated by the calcineurin/Crz1p signaling pathway in Saccharomyces cerevisiae

28 September 2017

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Distribution patterns of over-represented k-mers in non-coding yeast DNA.

28 September 2017

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Is there a code for protein-DNA recognition? Probab(ilistical)ly. . .

28 September 2017

1 reference

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Structural analysis of conserved base pairs in protein-DNA complexes

28 September 2017

1 reference

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The evolution of DNA regulatory regions for proteo-gamma bacteria by interspecies comparisons

28 September 2017

1 reference

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Enrichment of regulatory signals in conserved non-coding genomic sequence

28 September 2017

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Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes

28 September 2017

1 reference

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Conserved noncoding sequences are reliable guides to regulatory elements.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212491

Structure-based prediction of DNA target sites by regulatory proteins.

28 September 2017

1 reference

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Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212491

The Yeast Protein Database (YPD): a curated proteome database for Saccharomyces cerevisiae

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212491

DNA recognition code of transcription factors

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212491

DNA recognition by GAL4: structure of a protein-DNA complex.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212491

Evolutionary distances for protein-coding sequences: modeling site-specific residue frequencies.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212491

Protein-DNA interaction. No code for recognition

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212491

A maximum likelihood approach to the detection of selection from a phylogeny.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212491

Algorithms for phylogenetic footprinting.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212491

Site-by-site estimation of the rate of substitution and the correlation of rates in mitochondrial DNA.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212491

Surveying Saccharomyces genomes to identify functional elements by comparative DNA sequence analysis.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212491

Algorithms for extracting structured motifs using a suffix tree with an application to promoter and regulatory site consensus identification.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212491

Human-mouse genome comparisons to locate regulatory sites

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212491

SCPD: a promoter database of the yeast Saccharomyces cerevisiae.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212491

Transcriptional cooperativity: bending over backwards and doing the flip.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212491

Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=212491

Finding composite regulatory patterns in DNA sequences

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12946282