(Q24806285)

English

RNA:(guanine-N2) methyltransferases RsmC/RsmD and their homologs revisited--bioinformatic analysis and prediction of the active site based on the uncharacterized Mj0882 protein structure

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scholarly article

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RNA:(guanine-N2) methyltransferases RsmC/RsmD and their homologs revisited--bioinformatic analysis and prediction of the active site based on the uncharacterized Mj0882 protein structure (English)

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protein structure

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protein structure prediction

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1 reference

based on heuristic

inferred from title

Janusz Bujnicki

1

object named as

Janusz M Bujnicki

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Leszek Rychlewski

2

object named as

Leszek Rychlewski

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language of work or name

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publication date

3 April 2002

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BMC Bioinformatics

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3

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10

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1

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https://scigraph.springernature.com/pub.10.1186/1471-2105-3-10

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mRNA:guanine-N7 cap methyltransferases: identification of novel members of the family, evolutionary analysis, homology modeling, and analysis of sequence-structure-function relationships

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7 April 2017

The Protein Data Bank

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7 April 2017

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

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7 April 2017

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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The neighbor-joining method: a new method for reconstructing phylogenetic trees

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7 April 2017

Crystal structure of Rv2118c: an AdoMet-dependent methyltransferase from Mycobacterium tuberculosis H37Rv

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7 April 2017

Structure of the N6-adenine DNA methyltransferase M.TaqI in complex with DNA and a cofactor analog

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102759

7 April 2017

Structure of RsrI methyltransferase, a member of the N6-adenine beta class of DNA methyltransferases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=102759

7 April 2017

Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics

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7 April 2017

Crystal structure of a dimeric archaeal splicing endonuclease

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7 April 2017

RNA methylation under heat shock control

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7 April 2017

The 2.2 A structure of the rRNA methyltransferase ErmC' and its complexes with cofactor and cofactor analogs: implications for the reaction mechanism

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7 April 2017

Crystal structure of the DpnM DNA adenine methyltransferase from the DpnII restriction system of streptococcus pneumoniae bound to S-adenosylmethionine

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7 April 2017

Crystal structure and evolution of a transfer RNA splicing enzyme

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7 April 2017

Structure of pvu II DNA-(cytosine N4) methyltransferase, an example of domain permutation and protein fold assignment

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7 April 2017

Differential binding of S-adenosylmethionine S-adenosylhomocysteine and Sinefungin to the adenine-specific DNA methyltransferase M.TaqI

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7 April 2017

HhaI methyltransferase flips its target base out of the DNA helix

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7 April 2017

Crystal structure of catechol O-methyltransferase

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7 April 2017

The PSIPRED protein structure prediction server

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7 April 2017

SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling

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7 April 2017

Dali: a network tool for protein structure comparison

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7 April 2017

Protein structure comparison by alignment of distance matrices

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7 April 2017

The Gcd10p/Gcd14p complex is the essential two-subunit tRNA(1-methyladenosine) methyltransferase of Saccharomyces cerevisiae

1 reference

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7 April 2017

FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

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7 April 2017

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7 April 2017

Enhanced genome annotation using structural profiles in the program 3D-PSSM

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7 April 2017

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

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GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences

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7 April 2017

JPred: a consensus secondary structure prediction server

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7 April 2017

Surprising similarities in structure comparison

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7 April 2017

Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches

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The hemK gene in Escherichia coli encodes the N(5)-glutamine methyltransferase that modifies peptide release factors

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28 September 2017

HemK, a class of protein methyl transferase with similarity to DNA methyl transferases, methylates polypeptide chain release factors, and hemK knockout induces defects in translational termination

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28 September 2017

AdoMet-dependent methylation, DNA methyltransferases and base flipping

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28 September 2017

Evolution of function in protein superfamilies, from a structural perspective.

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28 September 2017

Phylogenomic analysis of 16S rRNA:(guanine-N2) methyltransferases suggests new family members and reveals highly conserved motifs and a domain structure similar to other nucleic acid amino-methyltransferases

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28 September 2017

m5C RNA and m5C DNA methyl transferases use different cysteine residues as catalysts

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28 September 2017

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28 September 2017

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based on heuristic

inferred from PubMed ID database lookup

Identification of bases in 16S rRNA essential for tRNA binding at the 30S ribosomal P site

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https://pubmed.ncbi.nlm.nih.gov/11929612

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparison of protein structures reveals monophyletic origin of the AdoMet-dependent methyltransferase family and mechanistic convergence rather than recent differentiation of N4-cytosine and N6-adenine DNA methylation

1 reference

https://pubmed.ncbi.nlm.nih.gov/11929612

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure prediction meta server

1 reference

https://pubmed.ncbi.nlm.nih.gov/11929612

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2105-3-10

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DBLP publication ID

journals/bmcbi/BujnickiR02

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

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