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PISCES: recent improvements to a PDB sequence culling server
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title
PISCES: recent improvements to a PDB sequence culling server
(English)
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author
Roland Dunbrack
series ordinal
2
object named as
Roland L Dunbrack
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author name string
Guoli Wang
series ordinal
1
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language of work or name
English
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publication date
1 July 2005
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published in
Nucleic Acids Research
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volume
33
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page(s)
W94-8
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issue
Web Server issue
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cites work
The Protein Data Bank
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160163
retrieved
7 April 2017
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160163
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7 April 2017
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160163
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7 April 2017
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160163
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7 April 2017
Errors in protein structures
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160163
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7 April 2017
Rotamer libraries in the 21st century
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160163
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7 April 2017
Database resources of the National Center for Biotechnology Information: update
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stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160163
retrieved
7 April 2017
PISCES: a protein sequence culling server
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160163
retrieved
7 April 2017
Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160163
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9 May 2017
The distribution and query systems of the RCSB Protein Data Bank
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160163
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28 September 2017
The ASTRAL Compendium in 2004
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160163
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28 September 2017
UniqueProt: Creating representative protein sequence sets
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160163
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28 September 2017
The Protein Data Bank: unifying the archive
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160163
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28 September 2017
PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB)
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160163
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28 September 2017
The PDB data uniformity project
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PubMed Central
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28 September 2017
Enlarged representative set of protein structures
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160163
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28 September 2017
Selection of representative protein data sets
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160163
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28 September 2017
Large-scale comparison of protein sequence alignment algorithms with structure alignments.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160163
retrieved
28 November 2018
COMPASS: a tool for comparison of multiple protein alignments with assessment of statistical significance
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/15980589
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1093/NAR/GKI402
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1832977
DBLP publication ID
journals/nar/WangD05
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
OpenCitations bibliographic resource ID
1832977
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1832977
PMCID
1160163
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1832977
PubMed ID
15980589
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1832977
ResearchGate publication ID
7762459
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