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Kalign--an accurate and fast multiple sequence alignment algorithm
scientific article
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instance of
scholarly article
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review article
1 reference
stated in
Europe PubMed Central
title
Kalign--an accurate and fast multiple sequence alignment algorithm
(English)
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main subject
sequence alignment
1 reference
based on heuristic
inferred from title
author
Timo Lassmann
series ordinal
1
0 references
Erik Sonnhammer
series ordinal
2
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language of work or name
English
0 references
publication date
2005
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published in
BMC Bioinformatics
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volume
6
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page(s)
298
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issue
1
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exact match
https://scigraph.springernature.com/pub.10.1186/1471-2105-6-298
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cites work
MUSCLE: multiple sequence alignment with high accuracy and high throughput
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1325270
retrieved
7 April 2017
The Pfam protein families database
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1325270
retrieved
7 April 2017
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1325270
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7 April 2017
A comprehensive comparison of multiple sequence alignment programs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1325270
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7 April 2017
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1325270
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7 April 2017
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1325270
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7 April 2017
The neighbor-joining method: a new method for reconstructing phylogenetic trees
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1325270
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7 April 2017
Improved tools for biological sequence comparison
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1325270
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7 April 2017
Amino acid substitution matrices from protein blocks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1325270
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7 April 2017
Basic local alignment search tool
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1325270
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7 April 2017
T-Coffee: A novel method for fast and accurate multiple sequence alignment
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1325270
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7 April 2017
Identification of common molecular subsequences
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1325270
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7 April 2017
A general method applicable to the search for similarities in the amino acid sequence of two proteins
1 reference
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PubMed Central
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7 April 2017
Phylogenomic inference of protein molecular function: advances and challenges
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7 April 2017
Recent progress in multiple sequence alignment: a survey
1 reference
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PubMed Central
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7 April 2017
Exhaustive matching of the entire protein sequence database
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1325270
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7 April 2017
Multiple sequence alignment using partial order graphs
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1325270
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7 April 2017
DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1325270
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7 April 2017
Progressive sequence alignment as a prerequisite to correct phylogenetic trees
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1325270
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7 April 2017
Rapid and sensitive sequence comparison with FASTP and FASTA
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1325270
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7 April 2017
Multiple alignment of complete sequences (MACS) in the post-genomic era.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1325270
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28 September 2017
BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1325270
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28 September 2017
BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1325270
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28 September 2017
Multiple DNA and protein sequence alignment based on segment-to-segment comparison
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1325270
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28 September 2017
Pattern recognition in nucleic acid sequences. I. A general method for finding local homologies and symmetries
1 reference
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1325270
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28 September 2017
Rose: generating sequence families.
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PubMed Central
reference URL
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31 May 2018
Quality assessment of multiple alignment programs.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1325270
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28 November 2018
Evaluation of protein multiple alignments by SAM-T99 using the BAliBASE multiple alignment test set.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1325270
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28 November 2018
An assessment of amino acid exchange matrices in aligning protein sequences: the twilight zone revisited
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/16343337
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1186/1471-2105-6-298
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
600478
DBLP publication ID
journals/bmcbi/LassmannS05
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
Dimensions Publication ID
1047546418
0 references
OpenCitations bibliographic resource ID
600478
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
600478
PMCID
1325270
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
600478
PubMed ID
16343337
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
600478
ResearchGate publication ID
7427390
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