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Rescuing stalled or damaged replication forks
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PubMed
title
Rescuing stalled or damaged replication forks
(English)
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PubMed
author
Philippe Pasero
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P. Pasero
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4
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author name string
J. T. P. Yeeles
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1
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stated in
Crossref
J. Poli
series ordinal
2
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Crossref
K. J. Marians
series ordinal
3
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Crossref
language of work or name
English
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stated in
PubMed
publication date
1 May 2013
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stated in
PubMed
published in
Cold Spring Harbor Perspectives in Biology
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stated in
Crossref
volume
5
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stated in
PubMed
page(s)
a012815
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stated in
PubMed
issue
5
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PubMed
cites work
Histone H3 lysine 56 acetylation and the response to DNA replication fork damage
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Human SLX4 is a Holliday junction resolvase subunit that binds multiple DNA repair/recombination endonucleases
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Mammalian BTBD12/SLX4 assembles a Holliday junction resolvase and is required for DNA repair
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Drosophila MUS312 and the vertebrate ortholog BTBD12 interact with DNA structure-specific endonucleases in DNA repair and recombination
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Coordination of structure-specific nucleases by human SLX4/BTBD12 is required for DNA repair
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Mcm10 and And-1/CTF4 recruit DNA polymerase alpha to chromatin for initiation of DNA replication
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Functional uncoupling of MCM helicase and DNA polymerase activities activates the ATR-dependent checkpoint.
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Instability and decay of the primary structure of DNA
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A conserved motif in the C-terminal tail of DNA polymerase α tethers primase to the eukaryotic replisome
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Mcm10 associates with the loaded DNA helicase at replication origins and defines a novel step in its activation
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Break-induced replication requires all essential DNA replication factors except those specific for pre-RC assembly.
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A key role for Ctf4 in coupling the MCM2-7 helicase to DNA polymerase alpha within the eukaryotic replisome.
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Separate roles for the DNA damage checkpoint protein kinases in stabilizing DNA replication forks.
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21 March 2017
Budding yeast Mms22 and Mms1 regulate homologous recombination induced by replisome blockage
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21 March 2017
Yeast Rad5 protein required for postreplication repair has a DNA helicase activity specific for replication fork regression
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21 March 2017
Rtt109 acetylates histone H3 lysine 56 and functions in DNA replication
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21 March 2017
Mrc1 and Tof1 promote replication fork progression and recovery independently of Rad53.
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Mcm10 regulates the stability and chromatin association of DNA polymerase-alpha.
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S-phase checkpoint proteins Tof1 and Mrc1 form a stable replication-pausing complex
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21 March 2017
Fork reversal and ssDNA accumulation at stalled replication forks owing to checkpoint defects
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Genome instability: a mechanistic view of its causes and consequences
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21 March 2017
PCNA, the maestro of the replication fork
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21 March 2017
Replisome assembly and the direct restart of stalled replication forks
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21 March 2017
Gaps and forks in DNA replication: Rediscovering old models
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21 March 2017
Interaction of human DNA polymerase eta with monoubiquitinated PCNA: a possible mechanism for the polymerase switch in response to DNA damage
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21 March 2017
Archaeology of eukaryotic DNA replication
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28 September 2017
Translesion DNA polymerases
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28 September 2017
Regulating DNA replication in plants
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28 September 2017
Mcm10 plays an essential role in origin DNA unwinding after loading of the CMG components
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28 September 2017
Topoisomerase I poisoning results in PARP-mediated replication fork reversal
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28 September 2017
SMARCAL1 catalyzes fork regression and Holliday junction migration to maintain genome stability during DNA replication
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28 September 2017
dNTP pools determine fork progression and origin usage under replication stress
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28 September 2017
RAD51- and MRE11-dependent reassembly of uncoupled CMG helicase complex at collapsed replication forks
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28 September 2017
Selective bypass of a lagging strand roadblock by the eukaryotic replicative DNA helicase.
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28 September 2017
Brca2, Rad51 and Mre11: performing balancing acts on replication forks
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28 September 2017
Coordinated protein and DNA remodeling by human HLTF on stalled replication fork
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28 September 2017
The replication checkpoint protects fork stability by releasing transcribed genes from nuclear pores.
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28 September 2017
Analysis of protein dynamics at active, stalled, and collapsed replication forks.
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28 September 2017
Timing and spacing of ubiquitin-dependent DNA damage bypass
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28 September 2017
Double-strand break repair-independent role for BRCA2 in blocking stalled replication fork degradation by MRE11.
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28 September 2017
Pathways of mammalian replication fork restart.
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28 September 2017
Response of the bacteriophage T4 replisome to noncoding lesions and regression of a stalled replication fork
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28 September 2017
Multiple Rad5 activities mediate sister chromatid recombination to bypass DNA damage at stalled replication forks
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28 September 2017
Ubiquitin-dependent DNA damage bypass is separable from genome replication
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28 September 2017
Stoichiometry and architecture of active DNA replication machinery in Escherichia coli
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28 September 2017
Continued primer synthesis at stalled replication forks contributes to checkpoint activation.
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28 September 2017
Hydroxyurea-stalled replication forks become progressively inactivated and require two different RAD51-mediated pathways for restart and repair.
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28 September 2017
Maintaining genome stability at the replication fork
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PubMed Central
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28 September 2017
The processing of double-stranded DNA breaks for recombinational repair by helicase-nuclease complexes
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PubMed Central
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28 September 2017
Recruitment to stalled replication forks of the PriA DNA helicase and replisome-loading activities is essential for survival
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PubMed Central
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28 September 2017
Involvement of a chromatin remodeling complex in damage tolerance during DNA replication
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28 September 2017
HARPing on about the DNA damage response during replication
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28 September 2017
Replication fork reversal and the maintenance of genome stability
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28 September 2017
The unnamed complex: what do we know about Smc5-Smc6?
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28 September 2017
TopBP1 and DNA polymerase-alpha directly recruit the 9-1-1 complex to stalled DNA replication forks.
1 reference
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PubMed Central
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28 September 2017
A microhomology-mediated break-induced replication model for the origin of human copy number variation
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28 September 2017
Excess MCM proteins protect human cells from replicative stress by licensing backup origins of replication.
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PubMed Central
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28 September 2017
PCNA ubiquitination and REV1 define temporally distinct mechanisms for controlling translesion synthesis in the avian cell line DT40.
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28 September 2017
The Fanconi anemia protein FANCM can promote branch migration of Holliday junctions and replication forks
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
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28 September 2017
Dormant origins licensed by excess Mcm2-7 are required for human cells to survive replicative stress.
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PubMed Central
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28 September 2017
Cleavage of stalled forks by fission yeast Mus81/Eme1 in absence of DNA replication checkpoint
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28 September 2017
Regulation of rtt107 recruitment to stalled DNA replication forks by the cullin rtt101 and the rtt109 acetyltransferase
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28 September 2017
Phosphorylation of Slx4 by Mec1 and Tel1 regulates the single-strand annealing mode of DNA repair in budding yeast
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PubMed Central
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28 September 2017
Inactivation of the DnaB helicase leads to the collapse and degradation of the replication fork: a comparison to UV-induced arrest
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PubMed Central
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28 September 2017
Arrested replication fork processing: interplay between checkpoints and recombination
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28 September 2017
Replisome instability, fork collapse, and gross chromosomal rearrangements arise synergistically from Mec1 kinase and RecQ helicase mutations
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
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28 September 2017
Nucleotide excision repair or polymerase V-mediated lesion bypass can act to restore UV-arrested replication forks in Escherichia coli
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
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28 September 2017
A role for cell-cycle-regulated histone H3 lysine 56 acetylation in the DNA damage response.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
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28 September 2017
Replication checkpoint kinase Cds1 regulates Mus81 to preserve genome integrity during replication stress
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
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28 September 2017
DNA replication fidelity
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PubMed Central
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28 September 2017
RecA-dependent recovery of arrested DNA replication forks
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
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28 September 2017
Uncoupling of leading- and lagging-strand DNA replication during lesion bypass in vivo
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
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28 September 2017
Recombinational repair and restart of damaged replication forks.
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PubMed Central
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28 September 2017
The bacterial RecA protein and the recombinational DNA repair of stalled replication forks
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PubMed Central
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28 September 2017
Formation of Holliday junctions by regression of nascent DNA in intermediates containing stalled replication forks: RecG stimulates regression even when the DNA is negatively supercoiled
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
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28 September 2017
RecA protein promotes the regression of stalled replication forks in vitro
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
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28 September 2017
Recovery of DNA replication in UV-irradiated Escherichia coli requires both excision repair and recF protein function
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
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28 September 2017
DNA replication triggered by double-stranded breaks in E. coli: dependence on homologous recombination functions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
retrieved
28 September 2017
Recovery from ultraviolet light-induced inhibition of DNA synthesis requires umuDC gene products in recA718 mutant strains but not in recA+ strains of Escherichia coli
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
retrieved
28 September 2017
Replication of simian virus 40 DNA after UV irradiation: evidence of growing fork blockage and single-stranded gaps in daughter strands.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
retrieved
28 September 2017
The Escherichia coli replisome is inherently DNA damage tolerant
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
retrieved
31 May 2018
Rad51 protects nascent DNA from Mre11-dependent degradation and promotes continuous DNA synthesis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
retrieved
31 May 2018
The RAD6 DNA damage tolerance pathway operates uncoupled from the replication fork and is functional beyond S phase.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
retrieved
31 May 2018
Replication fork stalling and cell cycle arrest in UV-irradiated Escherichia coli
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
retrieved
31 May 2018
The replication time of the Escherichia coli K12 chromosome as a function of cell doubling time
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
retrieved
31 May 2018
Replisome stability at defective DNA replication forks is independent of S phase checkpoint kinases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
retrieved
28 November 2018
Mcm10 plays a role in functioning of the eukaryotic replicative DNA helicase, Cdc45-Mcm-GINS.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
retrieved
28 November 2018
Polymerase exchange during Okazaki fragment synthesis observed in living cells.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
retrieved
28 November 2018
Nearby inverted repeats fuse to generate acentric and dicentric palindromic chromosomes by a replication template exchange mechanism.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
retrieved
28 November 2018
Ctf4 coordinates the progression of helicase and DNA polymerase alpha.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
retrieved
28 November 2018
The MRX complex stabilizes the replisome independently of the S phase checkpoint during replication stress
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
retrieved
28 November 2018
The FANCM ortholog Fml1 promotes recombination at stalled replication forks and limits crossing over during DNA double-strand break repair
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
retrieved
28 November 2018
Ino80 chromatin remodeling complex promotes recovery of stalled replication forks.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
retrieved
28 November 2018
The Ino80 chromatin-remodeling enzyme regulates replisome function and stability.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
retrieved
28 November 2018
The structure-specific endonuclease Mus81 contributes to replication restart by generating double-strand DNA breaks.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
retrieved
28 November 2018
Characterization of a triple DNA polymerase replisome.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
retrieved
28 November 2018
Replication fork reactivation downstream of a blocked nascent leading strand.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
retrieved
28 November 2018
Exo1 processes stalled replication forks and counteracts fork reversal in checkpoint-defective cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
retrieved
28 November 2018
Functional uncoupling of twin polymerases: mechanism of polymerase dissociation from a lagging-strand block.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
retrieved
28 November 2018
Fate of DNA replication fork encountering a single DNA lesion during oriC plasmid DNA replication in vitro
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
retrieved
28 November 2018
DNA damage-induced replication fork regression and processing in Escherichia coli.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632063
retrieved
28 November 2018
Modulation of RNA polymerase by (p)ppGpp reveals a RecG-dependent mechanism for replication fork progression
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23637285
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
A Postincision-Deficient TFIIH Causes Replication Fork Breakage and Uncovers Alternative Rad51- or Pol32-Mediated Restart Mechanisms
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23637285
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The Cullin Rtt101p Promotes Replication Fork Progression through Damaged DNA and Natural Pause Sites
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23637285
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The disposition of nascent strands at stalled replication forks dictates the pathway of replisome loading during restart
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23637285
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Usefulness of benzoylated naphthoylated DEAE-cellulose to distinguish and fractionate double-stranded DNA bearing different extents of single-stranded regions
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23637285
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Unwinding of the nascent lagging strand by Rep and PriA enables the direct restart of stalled replication forks
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23637285
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
PriA mediates DNA replication pathway choice at recombination intermediates
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23637285
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
DNA damage signaling recruits the Rtt107-Slx4 scaffolds via Dpb11 to mediate replication stress response
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23637285
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Multiple Mechanisms Control Chromosome Integrity after Replication Fork Uncoupling and Restart at Irreparable UV Lesions
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23637285
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Homologous Recombination Restarts Blocked Replication Forks at the Expense of Genome Rearrangements by Template Exchange
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23637285
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
A model for replication repair in mammalian cells
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23637285
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Discontinuities in the DNA synthesized in an Excision-defective strain of Escherichia coli following ultraviolet irradiation
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23637285
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Rescuing stalled replication forks: MMS22L-TONSL, a novel complex for DNA replication fork repair in human cells
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23637285
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Mechanism of transient inhibition of DNA synthesis in ultraviolet-irradiated E. coli: inhibition is independent of recA whilst recovery requires RecA protein itself and an additional, inducible SOS function
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23637285
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1101/CSHPERSPECT.A012815
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
3002925
OpenCitations bibliographic resource ID
3002925
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
3002925
PMCID
3632063
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
3002925
PubMed ID
23637285
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
3002925
ResearchGate publication ID
236603694
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