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MRNA splicing protein SMD3 YLR147C
fungal protein found in Saccharomyces cerevisiae S288c
mRNA splicing protein SMD3
YLR147C
SMD3
In more languages
edit
Statements
instance of
protein
1 reference
stated in
UniProt
retrieved
25 May 2022
UniProt protein ID
P43321
subclass of
protein
1 reference
stated in
UniProt
retrieved
19 January 2017
UniProt protein ID
P43321
part of
LSM domain superfamily
1 reference
stated in
InterPro Release 71.0
reference URL
http://www.ebi.ac.uk/interpro/protein/P43321
Small nuclear ribonucleoprotein Sm D3
1 reference
stated in
InterPro Release 71.0
reference URL
http://www.ebi.ac.uk/interpro/protein/P43321
LSM domain, eukaryotic/archaea-type, protein family
1 reference
based on heuristic
inferred from protein domain or family
found in taxon
Saccharomyces cerevisiae S288c
1 reference
stated in
UniProt
retrieved
25 May 2022
UniProt protein ID
P43321
encoded by
SMD3
1 reference
stated in
UniProt
retrieved
25 May 2022
UniProt protein ID
P43321
molecular function
RNA binding
determination method
IEA
1 reference
retrieved
16 July 2018
stated in
GOA
curator
UniProt
UniProt protein ID
P43321
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?protein=P43321&geneProductId=UniProtKB:P43321
determination method
IEA
mRNA binding
determination method
IPI
1 reference
retrieved
9 May 2019
stated in
Identification of eight proteins that cross-link to pre-mRNA in the yeast commitment complex
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IPI
protein binding
determination method
IPI
1 reference
retrieved
9 May 2019
stated in
Interactions within the yeast Sm core complex: from proteins to amino acids
GOA
curator
IntAct protein interaction database
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IPI
RNA binding
determination method
IBA
IEA
2 references
retrieved
9 May 2019
stated in
GOA
curator
UniProt
UniProt protein ID
P43321
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IEA
retrieved
9 May 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IBA
cell component
U2-type prespliceosome
determination method
IDA
1 reference
retrieved
9 May 2019
stated in
Arrested yeast splicing complexes indicate stepwise snRNP recruitment during in vivo spliceosome assembly
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IDA
catalytic step 2 spliceosome
determination method
IBA
1 reference
retrieved
9 May 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IBA
cytoplasm
determination method
IEA
1 reference
retrieved
9 May 2019
stated in
GOA
curator
UniProt
UniProt protein ID
P43321
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IEA
pICln-Sm protein complex
determination method
IBA
1 reference
retrieved
9 May 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IBA
nucleus
determination method
IEA
1 reference
retrieved
9 May 2019
stated in
GOA
curator
UniProt
UniProt protein ID
P43321
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IEA
commitment complex
determination method
IPI
1 reference
retrieved
16 July 2018
stated in
Identification of eight proteins that cross-link to pre-mRNA in the yeast commitment complex
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?protein=P43321&geneProductId=UniProtKB:P43321
determination method
IPI
U1 snRNP
determination method
IDA
2 references
retrieved
16 July 2018
stated in
Identification of the proteins of the yeast U1 small nuclear ribonucleoprotein complex by mass spectrometry
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?protein=P43321&geneProductId=UniProtKB:P43321
determination method
IDA
retrieved
16 July 2018
stated in
A comprehensive biochemical and genetic analysis of the yeast U1 snRNP reveals five novel proteins.
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?protein=P43321&geneProductId=UniProtKB:P43321
determination method
IDA
U2 snRNP
determination method
IBA
1 reference
retrieved
9 May 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IBA
U5 snRNP
determination method
IDA
2 references
retrieved
16 July 2018
stated in
Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?protein=P43321&geneProductId=UniProtKB:P43321
determination method
IDA
retrieved
16 July 2018
stated in
The yeast U5 snRNP coisolated with the U1 snRNP has an unexpected protein composition and includes the splicing factor Aar2p
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?protein=P43321&geneProductId=UniProtKB:P43321
determination method
IDA
U4 snRNP
determination method
IBA
1 reference
retrieved
9 May 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IBA
SMN-Sm protein complex
determination method
IBA
1 reference
retrieved
9 May 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IBA
U4/U6 x U5 tri-snRNP complex
determination method
IDA
2 references
retrieved
9 May 2019
stated in
Identification by mass spectrometry and functional analysis of novel proteins of the yeast [U4/U6.U5] tri-snRNP.
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IDA
retrieved
9 May 2019
stated in
Purification of the yeast U4/U6.U5 small nuclear ribonucleoprotein particle and identification of its proteins
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IDA
precatalytic spliceosome
determination method
IBA
1 reference
retrieved
16 July 2018
stated in
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?protein=P43321&geneProductId=UniProtKB:P43321
determination method
IBA
U12-type spliceosomal complex
determination method
IBA
1 reference
retrieved
9 May 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IBA
spliceosomal complex
determination method
IEA
1 reference
retrieved
9 May 2019
stated in
GOA
curator
InterPro
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IEA
commitment complex
determination method
IBA
IPI
2 references
retrieved
9 May 2019
stated in
Identification of eight proteins that cross-link to pre-mRNA in the yeast commitment complex
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IPI
retrieved
9 May 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IBA
U5 snRNP
determination method
IBA
IDA
3 references
retrieved
9 May 2019
stated in
Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IDA
retrieved
9 May 2019
stated in
The yeast U5 snRNP coisolated with the U1 snRNP has an unexpected protein composition and includes the splicing factor Aar2p
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IDA
retrieved
9 May 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IBA
U1 snRNP
determination method
IBA
IDA
3 references
retrieved
9 May 2019
stated in
Identification of the proteins of the yeast U1 small nuclear ribonucleoprotein complex by mass spectrometry
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IDA
retrieved
9 May 2019
stated in
A comprehensive biochemical and genetic analysis of the yeast U1 snRNP reveals five novel proteins.
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IDA
retrieved
9 May 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IBA
biological process
mRNA processing
determination method
IEA
1 reference
retrieved
9 May 2019
stated in
GOA
curator
UniProt
UniProt protein ID
P43321
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IEA
spliceosomal complex assembly
determination method
IBA
1 reference
retrieved
16 July 2018
stated in
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?protein=P43321&geneProductId=UniProtKB:P43321
determination method
IBA
RNA splicing
determination method
IEA
1 reference
retrieved
9 May 2019
stated in
GOA
curator
UniProt
UniProt protein ID
P43321
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IEA
RNA processing
determination method
IEA
1 reference
retrieved
9 May 2019
stated in
GOA
curator
InterPro
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IEA
mRNA splicing, via spliceosome
determination method
IPI
1 reference
retrieved
9 May 2019
stated in
Identification of eight proteins that cross-link to pre-mRNA in the yeast commitment complex
GOA
curator
SGD
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IPI
spliceosomal snRNP assembly
determination method
IBA
IEA
2 references
retrieved
9 May 2019
stated in
GOA
curator
InterPro
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IEA
retrieved
9 May 2019
stated in
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
GOA
curator
GO Central
reference URL
http://www.ebi.ac.uk/QuickGO/annotations?geneProductId=UniProtKB:P43321
determination method
IBA
has part(s)
LSM domain, eukaryotic/archaea-type
1 reference
stated in
InterPro Release 71.0
reference URL
http://www.ebi.ac.uk/interpro/protein/P43321
Identifiers
RefSeq protein ID
NP_013248
1 reference
stated in
NCBI Gene
retrieved
20 March 2022
Entrez Gene ID
850839
UniProt protein ID
P43321
1 reference
stated in
UniProt
retrieved
25 May 2022
UniProt protein ID
P43321
Ensembl protein ID
YLR147C
1 reference
stated in
ensembl Release 106
Ensembl protein ID
YLR147C
Saccharomyces Genome Database ID
S000004137
1 reference
stated in
NCBI Gene
retrieved
20 March 2022
Entrez Gene ID
850839
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