(Q27674934)

2

0 references

Chia-Han Chu

3

0 references

Wen-Hwei Hsu

4

0 references

Wen-Ching Wang

Creative Commons Attribution 4.0 International

5

0 references

language of work or name

English

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publication date

2012

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published in

PLOS One

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volume

7

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issue

10

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page(s)

e48301

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copyright license

start time

31 October 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Structures of an alanine racemase fromBacillus anthracis(BA0252) in the presence and absence of (R)-1-aminoethylphosphonic acid (L-Ala-P)

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Residues Asp164 and Glu165 at the substrate entryway function potently in substrate orientation of alanine racemase fromE. coli: Enzymatic characterization with crystal structure analysis

20 March 2017

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Crystal structure at 1.45 A resolution of alanine racemase from a pathogenic bacterium, Pseudomonas aeruginosa, contains both internal and external aldimine forms

20 March 2017

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Reaction mechanism of alanine racemase from Bacillus stearothermophilus: x-ray crystallographic studies of the enzyme bound with N-(5'-phosphopyridoxyl)alanine

20 March 2017

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Structure of a Michaelis complex analogue: propionate binds in the substrate carboxylate site of alanine racemase

20 March 2017

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Reaction of alanine racemase with 1-aminoethylphosphonic acid forms a stable external aldimine

20 March 2017

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Determination of the structure of alanine racemase from Bacillus stearothermophilus at 1.9-A resolution

20 March 2017

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Features and development of Coot

20 March 2017

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Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions

20 March 2017

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Refinement of macromolecular structures by the maximum-likelihood method

20 March 2017

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Automated refinement of protein models

20 March 2017

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20 March 2017

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PHENIX: building new software for automated crystallographic structure determination

20 March 2017

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Improved methods for building protein models in electron density maps and the location of errors in these models

21 January 2018

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The 1.9 A crystal structure of alanine racemase from Mycobacterium tuberculosis contains a conserved entryway into the active site

20 March 2017

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A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding

20 March 2017

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Detection and Alignment of 3D Domain Swapping Proteins Using Angle-Distance Image-Based Secondary Structural Matching Techniques

7 April 2017

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Isolation and characterization of a novel lysine racemase from a soil metagenomic library

29 September 2017

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On the relationship between sequence and structure similarities in proteomics.

29 September 2017

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Finding a needle in a haystack: development of a combinatorial virtual screening approach for identifying high specificity heparin/heparan sulfate sequence(s).

29 September 2017

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Distribution of lysine racemase in bacteria.

29 September 2017

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High throughput docking for library design and library prioritization

29 September 2017

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Functional characterization of alanine racemase from Schizosaccharomyces pombe: a eucaryotic counterpart to bacterial alanine racemase

29 September 2017

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The manifold of vitamin B6 dependent enzymes.

29 September 2017

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A new amino acid racemase with threonine alpha-epimerase activity from Pseudomonas putida: purification and characterization

29 September 2017

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Bacterial glutamate racemase has high sequence similarity with myoglobins and forms an equimolar inactive complex with hemin

29 September 2017

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D-lysine catabolic pathway in Pseudomonas putida: interrelations with L-lysine catabolism

29 September 2017

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Effect of D-amino acids on structure and synthesis of peptidoglycan in Escherichia coli

29 September 2017

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Chemical structure of the peptidoglycan, its modifiability and relation to the biological activity

29 September 2017

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Processing of X-ray diffraction data collected in oscillation mode

29 September 2017

1 reference

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Lysine racemase: a novel non-antibiotic selectable marker for plant transformation

2 June 2018

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The dominant role of side-chain backbone interactions in structural realization of amino acid code. ChiRotor: a side-chain prediction algorithm based on side-chain backbone interactions

2 June 2018

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Detailed analysis of grid-based molecular docking: A case study of CDOCKER-A CHARMm-based MD docking algorithm.

2 June 2018

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The 92-min region of the Escherichia coli chromosome: location and cloning of the ubiA and alr genes.

2 June 2018

1 reference

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Biosynthetic alanine racemase of Salmonella typhimurium: purification and characterization of the enzyme encoded by the alr gene

2 June 2018

1 reference

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Expression of alr gene from Corynebacterium glutamicum ATCC 13032 in Escherichia coli and molecular characterization of the recombinant alanine racemase.

2 June 2018

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Alanine racemase of alfalfa seedlings (Medicago sativa L.): first evidence for the presence of an amino acid racemase in plants.

21 January 2018

1 reference

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Structural evidence that alanine racemase from a D-cycloserine-producing microorganism exhibits resistance to its own product

21 January 2018

1 reference

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Synthesis of DL-tryptophan by modified broad specificity amino acid racemase from Pseudomonas putida IFO 12996.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0048301

Site-directed mutagenesis of Tyr354 in Geobacillus stearothermophilus alanine racemase identifies a role in controlling substrate specificity and a possible role in the evolution of antibiotic resistance

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0048301

MOLREP: an Automated Program for Molecular Replacement

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0048301

PROCHECK: a program to check the stereochemical quality of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0048301

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0048301

A general and fast scoring function for protein-ligand interactions: a simplified potential approach.

21 January 2018

1 reference

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Purification and properties of amino acid racemase from Aeromonas punctata subsp. caviae.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3485190

Role of lysine 39 of alanine racemase from Bacillus stearothermophilus that binds pyridoxal 5'-phosphate. Chemical rescue studies of Lys39 --> Ala mutant

27 November 2018

1 reference

12 December 2020

Structure-stability-activity relationship in covalently cross-linked N-carbamoyl D-amino acid amidohydrolase and N-acylamino acid racemase

1 reference

12 December 2020

LigScore: a novel scoring function for predicting binding affinities

1 reference

12 December 2020

Evidence for a two-base mechanism involving tyrosine-265 from arginine-219 mutants of alanine racemase

1 reference

12 December 2020

Tyrosine 265 of alanine racemase serves as a base abstracting alpha-hydrogen from L-alanine: the counterpart residue to lysine 39 specific to D-alanine

1 reference

12 December 2020