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Genome regulation by long noncoding RNAs.
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PubMed
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Europe PubMed Central
PMCID
3858397
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22663078%20AND%20SRC:MED&resulttype=core&format=json
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3 February 2020
title
Genome regulation by long noncoding RNAs
(English)
1 reference
stated in
Europe PubMed Central
PMCID
3858397
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22663078%20AND%20SRC:MED&resulttype=core&format=json
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3 February 2020
author
John L. Rinn
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
3858397
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22663078%20AND%20SRC:MED&resulttype=core&format=json
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3 February 2020
author name string
Howard Y Chang
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2
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Europe PubMed Central
PMCID
3858397
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22663078%20AND%20SRC:MED&resulttype=core&format=json
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3 February 2020
publication date
1 January 2012
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Europe PubMed Central
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3858397
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3 February 2020
number of pages
22
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based on heuristic
inferred from page(s)
published in
Annual Review of Biochemistry
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PubMed
stated in
Europe PubMed Central
PMCID
3858397
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22663078%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 February 2020
volume
81
2 references
stated in
PubMed
stated in
Europe PubMed Central
PMCID
3858397
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22663078%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 February 2020
page(s)
145-166
1 reference
stated in
Europe PubMed Central
PMCID
3858397
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22663078%20AND%20SRC:MED&resulttype=core&format=json
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3 February 2020
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The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
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Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
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Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
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Mouse polycomb proteins bind differentially to methylated histone H3 and RNA and are enriched in facultative heterochromatin
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Molecular mechanisms of long noncoding RNAs
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lincRNAs act in the circuitry controlling pluripotency and differentiation
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A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression
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lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3' UTRs via Alu elements
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7 April 2017
Evolution and functions of long noncoding RNAs
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7 April 2017
Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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7 April 2017
Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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7 April 2017
Global identification of human transcribed sequences with genome tiling arrays
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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7 April 2017
Functional annotation of a full-length mouse cDNA collection
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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7 April 2017
Understanding the transcriptome through RNA structure
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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29 September 2017
Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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29 September 2017
The reality of pervasive transcription
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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29 September 2017
Gene silencing in X-chromosome inactivation: advances in understanding facultative heterochromatin formation
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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29 September 2017
A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAs
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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29 September 2017
Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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29 September 2017
Computational methods for transcriptome annotation and quantification using RNA-seq
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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29 September 2017
To repress or not to repress: this is the guardian's question
1 reference
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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29 September 2017
Long noncoding RNAs and human disease
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
retrieved
29 September 2017
Tarsal-less peptides control Notch signalling through the Shavenbaby transcription factor
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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29 September 2017
No-nonsense functions for long noncoding RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
retrieved
29 September 2017
TERRA and hnRNPA1 orchestrate an RPA-to-POT1 switch on telomeric single-stranded DNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
retrieved
29 September 2017
RNA templating the epigenome: long noncoding RNAs as molecular scaffolds
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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29 September 2017
Overexpression of long non-coding RNA HOTAIR predicts tumor recurrence in hepatocellular carcinoma patients following liver transplantation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
retrieved
29 September 2017
Long intergenic noncoding RNAs: new links in cancer progression
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
retrieved
29 September 2017
Expression of linear and novel circular forms of an INK4/ARF-associated non-coding RNA correlates with atherosclerosis risk.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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29 September 2017
Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA.
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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29 September 2017
Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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29 September 2017
FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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29 September 2017
Molecular signals of epigenetic states
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
retrieved
29 September 2017
Interaction of noncoding RNA with the rDNA promoter mediates recruitment of DNMT3b and silencing of rRNA genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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29 September 2017
Genome-wide measurement of RNA secondary structure in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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29 September 2017
Characterization of the RNA content of chromatin
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
retrieved
29 September 2017
RNA traffic control of chromatin complexes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
retrieved
29 September 2017
3'-end sequencing for expression quantification (3SEQ) from archival tumor samples
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
retrieved
29 September 2017
Lessons from X-chromosome inactivation: long ncRNA as guides and tethers to the epigenome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
retrieved
29 September 2017
Trans-acting antisense RNAs mediate transcriptional gene cosuppression in S. cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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29 September 2017
Genome-wide views of chromatin structure
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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29 September 2017
P53 mRNA controls p53 activity by managing Mdm2 functions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
retrieved
29 September 2017
Performance and scalability of discriminative metrics for comparative gene identification in 12 Drosophila genomes
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
retrieved
29 September 2017
A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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29 September 2017
A structural understanding of the dynamic ribosome machine
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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29 September 2017
Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
retrieved
29 September 2017
RNA as a flexible scaffold for proteins: yeast telomerase and beyond.
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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29 September 2017
Transcriptional noise and the fidelity of initiation by RNA polymerase II.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
retrieved
29 September 2017
Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
retrieved
29 September 2017
A translation-independent role of oskar RNA in early Drosophila oogenesis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
retrieved
29 September 2017
RNA meets chromatin
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
retrieved
29 September 2017
Potential structural role of non-coding and coding RNAs in the organization of the cytoskeleton at the vegetal cortex of Xenopus oocytes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
retrieved
29 September 2017
Further Evidence That the Majority of Primary Nuclear RNA Transcripts in Mammalian Cells Do Not Contribute to mRNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
retrieved
29 September 2017
Intracellular distribution of labeled ribonucleic acid after phage infection of Escherichia coli
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
retrieved
29 September 2017
Experimental annotation of the human genome using microarray technology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
retrieved
29 September 2017
Large Heterogeneous Nuclear Ribonucleic Acid Has Three Times as Many 5′ Caps as Polyadenylic Acid Segments, and Most Caps Do Not Enter Polyribosomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
retrieved
29 September 2017
A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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29 September 2017
The mouse insulin-like growth factor type-2 receptor is imprinted and closely linked to the Tme locus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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29 September 2017
Chromatin-associated RNA content of heterochromatin and euchromatin
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
retrieved
2 June 2018
Long noncoding RNA HOTAIR regulates polycomb-dependent chromatin modification and is associated with poor prognosis in colorectal cancers.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
retrieved
27 November 2018
XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
retrieved
27 November 2018
Higher-order structure in pericentric heterochromatin involves a distinct pattern of histone modification and an RNA component
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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27 November 2018
Small molecular weight monodisperse nuclear RNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3858397
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27 November 2018
Rapidly labeled HeLa cell nuclear RNA. I. Identification by zone sedimentation of a heterogeneous fraction separate from ribosomal precursor RNA
1 reference
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PubMed
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1146/ANNUREV-BIOCHEM-051410-092902
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
139998
stated in
Europe PubMed Central
PMCID
3858397
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22663078%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 February 2020
OpenCitations bibliographic resource ID
139998
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
139998
PMCID
3858397
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
139998
stated in
Europe PubMed Central
PMCID
3858397
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22663078%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 February 2020
PubMed ID
22663078
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
139998
stated in
Europe PubMed Central
PMCID
3858397
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22663078%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 February 2020
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