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Interactions of the yeast SF3b splicing factor
scientific article
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instance of
scholarly article
1 reference
stated in
PubMed
PubMed ID
16314500
retrieved
1 December 2016
title
Interactions of the yeast SF3b splicing factor
(English)
1 reference
stated in
PubMed
PubMed ID
16314500
retrieved
1 December 2016
main subject
cell biology
0 references
Mud2p YKL074C
1 reference
stated in
GOA release 2020-03-11
MRNA splicing protein MSL5 YLR116W
1 reference
stated in
GOA release 2020-03-11
U2 snRNP complex subunit CUS1 YMR240C
1 reference
stated in
GOA release 2020-03-11
U2 snRNP complex subunit IST3 YIR005W
1 reference
stated in
GOA release 2020-03-11
U2 snRNP complex subunit RDS3 YPR094W
1 reference
stated in
GOA release 2020-03-11
U2 snRNP complex subunit RSE1 YML049C
1 reference
stated in
GOA release 2020-03-11
U2 snRNP complex subunit YSF3 YNL138W-A
1 reference
stated in
GOA release 2020-03-11
U2 snRNP complex subunit HSH49 YOR319W
1 reference
stated in
GOA release 2020-03-11
U2 snRNP complex subunit BUD31 YCR063W
1 reference
stated in
GOA release 2020-03-11
Pml1p YLR016C
1 reference
stated in
GOA release 2020-03-11
Bud13p YGL174W
1 reference
stated in
GOA release 2020-03-11
U2 snRNP complex subunit HSH155 YMR288W
1 reference
stated in
GOA release 2020-03-11
author name string
Qiang Wang
series ordinal
1
0 references
Jin He
series ordinal
2
0 references
Bert Lynn
series ordinal
3
0 references
Brian C Rymond
series ordinal
4
0 references
language of work or name
English
0 references
publication date
December 2005
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published in
Molecular and Cellular Biology
1 reference
stated in
PubMed
PubMed ID
16314500
retrieved
1 December 2016
volume
25
0 references
page(s)
10745-54
0 references
issue
24
0 references
cites work
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Prp5 bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA
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Rds3p Is Required for Stable U2 snRNP Recruitment to the Splicing Apparatus
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Genetic interactions with CLF1 identify additional pre-mRNA splicing factors and a link between activators of yeast vesicular transport and splicing.
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Spatial organization of protein-RNA interactions in the branch site-3' splice site region during pre-mRNA splicing in yeast
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20 March 2017
The Clf1p splicing factor promotes spliceosome assembly through N-terminal tetratricopeptide repeat contacts
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PubMed Central
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20 March 2017
Characterization of novel SF3b and 17S U2 snRNP proteins, including a human Prp5p homologue and an SF3b DEAD-box protein
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PubMed Central
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Functional profiling of the Saccharomyces cerevisiae genome
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20 March 2017
Proteomics analysis reveals stable multiprotein complexes in both fission and budding yeasts containing Myb-related Cdc5p/Cef1p, novel pre-mRNA splicing factors, and snRNAs.
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20 March 2017
Functional and physical interactions between components of the Prp19p-associated complex
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Composition and functional characterization of the yeast spliceosomal penta-snRNP.
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20 March 2017
A novel U2 and U11/U12 snRNP protein that associates with the pre-mRNA branch site.
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PubMed Central
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20 March 2017
A novel yeast U2 snRNP protein, Snu17p, is required for the first catalytic step of splicing and for progression of spliceosome assembly
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PubMed Central
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20 March 2017
A comprehensive two-hybrid analysis to explore the yeast protein interactome
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PubMed Central
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20 March 2017
Genetic and physical interactions between factors involved in both cell cycle progression and pre-mRNA splicing in Saccharomyces cerevisiae
1 reference
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PubMed Central
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20 March 2017
Functional Cus1p is found with Hsh155p in a multiprotein splicing factor associated with U2 snRNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1316957
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20 March 2017
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
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PubMed Central
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20 March 2017
Yeast ortholog of the Drosophila crooked neck protein promotes spliceosome assembly through stable U4/U6.U5 snRNP addition
1 reference
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PubMed Central
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20 March 2017
Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis
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PubMed Central
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20 March 2017
Transient interaction of BBP/ScSF1 and Mud2 with the splicing machinery affects the kinetics of spliceosome assembly
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1316957
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20 March 2017
A potential role for U2AF-SAP 155 interactions in recruiting U2 snRNP to the branch site
1 reference
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PubMed Central
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20 March 2017
Progression through the spliceosome cycle requires Prp38p function for U4/U6 snRNA dissociation
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PubMed Central
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20 March 2017
Conservation of structure and subunit interactions in yeast homologues of splicing factor 3b (SF3b) subunits
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PubMed Central
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20 March 2017
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
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PubMed Central
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20 March 2017
Cross-intron bridging interactions in the yeast commitment complex are conserved in mammals
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1316957
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20 March 2017
Evidence that sequence-independent binding of highly conserved U2 snRNP proteins upstream of the branch site is required for assembly of spliceosomal complex A
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1316957
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20 March 2017
The yeast MUD2 protein: an interaction with PRP11 defines a bridge between commitment complexes and U2 snRNP addition
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1316957
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20 March 2017
Early commitment of yeast pre-mRNA to the spliceosome pathway
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1316957
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20 March 2017
Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1316957
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20 March 2017
The tandem affinity purification (TAP) method: a general procedure of protein complex purification
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1316957
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20 March 2017
Toward a functional analysis of the yeast genome through exhaustive two-hybrid screens
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1316957
retrieved
20 March 2017
Molecular Architecture of the Multiprotein Splicing Factor SF3b
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1316957
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20 March 2017
A human nuclear-localized chaperone that regulates dimerization, DNA binding, and transcriptional activity of bZIP proteins
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1316957
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20 March 2017
U2AF65 recruits a novel human DEAD box protein required for the U2 snRNP-branchpoint interaction
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1316957
retrieved
20 March 2017
Pre-mRNA splicing: awash in a sea of proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1316957
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7 April 2017
Allosteric cascade of spliceosome activation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1316957
retrieved
7 April 2017
Mer1p is a modular splicing factor whose function depends on the conserved U2 snRNP protein Snu17p.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1316957
retrieved
29 September 2017
ATP requirement for Prp5p function is determined by Cus2p and the structure of U2 small nuclear RNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1316957
retrieved
29 September 2017
Deletion of MUD2, the yeast homolog of U2AF65, can bypass the requirement for sub2, an essential spliceosomal ATPase
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1316957
retrieved
29 September 2017
ATP can be dispensable for prespliceosome formation in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1316957
retrieved
29 September 2017
Small nuclear ribonucleoprotein (RNP) U2 contains numerous additional proteins and has a bipartite RNP structure under splicing conditions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1316957
retrieved
29 September 2017
The yeast PRP19 protein is not tightly associated with small nuclear RNAs, but appears to associate with the spliceosome after binding of U2 to the pre-mRNA and prior to formation of the functional spliceosome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1316957
retrieved
29 September 2017
PRP38 encodes a yeast protein required for pre-mRNA splicing and maintenance of stable U6 small nuclear RNA levels
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1316957
retrieved
29 September 2017
Electrophoresis of ribonucleoproteins reveals an ordered assembly pathway of yeast splicing complexes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1316957
retrieved
2 June 2018
Domains of yeast U4 spliceosomal RNA required for PRP4 protein binding, snRNP-snRNP interactions, and pre-mRNA splicing in vivo
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1316957
retrieved
2 June 2018
An ATP-independent complex commits pre-mRNA to the mammalian spliceosome assembly pathway
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1316957
retrieved
2 June 2018
A novel role for a U5 snRNP protein in 3' splice site selection.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1316957
retrieved
27 November 2018
A factor, U2AF, is required for U2 snRNP binding and splicing complex assembly
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/16314500
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Separation of splicing factor SF3 into two components and purification of SF3a activity
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/16314500
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Interaction of mammalian splicing factor SF3a with U2 snRNP and relation of its 60-kD subunit to yeast PRP9
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/16314500
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1128/MCB.25.24.10745-10754.2005
1 reference
stated in
PubMed
PubMed ID
16314500
retrieved
1 December 2016
PMCID
1316957
0 references
PubMed ID
16314500
1 reference
stated in
PubMed
PubMed ID
16314500
retrieved
1 December 2016
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