(Q27936457)

1 December 2016

title

Kinetic model for the ATP-dependent translocation of Saccharomyces cerevisiae RSC along double-stranded DNA. (English)

1 reference

1 December 2016

main subject

Saccharomyces cerevisiae

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author name string

Christopher J Fischer

series ordinal

1

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Anjanabha Saha

series ordinal

2

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Bradley R Cairns

series ordinal

3

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publication date

30 October 2007

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language of work or name

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1 reference

DNA translocation and loop formation mechanism of chromatin remodeling by SWI/SNF and RSC.

1 December 2016

volume

46

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issue

43

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page(s)

12416-26

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810488

Direct observation of DNA distortion by the RSC complex

20 March 2017

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Chromatin remodeling by RSC involves ATP-dependent DNA translocation

20 March 2017

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Translating the Histone Code

20 March 2017

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Crystal structure of the nucleosome core particle at 2.8 Å resolution

20 March 2017

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RSC, an essential, abundant chromatin-remodeling complex

20 March 2017

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The ATPase reaction cycle of yeast DNA topoisomerase II. Slow rates of ATP resynthesis and P(i) release

20 March 2017

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Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome

20 March 2017

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ATP-dependent nucleosome remodeling

20 March 2017

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7 April 2017

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Chromatin remodelling: the industrial revolution of DNA around histones

7 April 2017

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Autoinhibition of Escherichia coli Rep monomer helicase activity by its 2B subdomain

29 September 2017

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ATP-dependent translocation of proteins along single-stranded DNA: models and methods of analysis of pre-steady state kinetics

29 September 2017

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ATP-dependent nucleosome remodelling: factors and functions

29 September 2017

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Mechanisms for ATP-dependent chromatin remodelling: farewell to the tuna-can octamer?

29 September 2017

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Effects of temperature and ATP on the kinetic mechanism and kinetic step-size for E.coli RecBCD helicase-catalyzed DNA unwinding

29 September 2017

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Single-molecule assay reveals strand switching and enhanced processivity of UvrD

29 September 2017

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Multiple roles for ISWI in transcription, chromosome organization and DNA replication

29 September 2017

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Chromatin remodeling by ATP-dependent molecular machines.

29 September 2017

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Histone deacetylase inhibitor LAQ824 down-regulates Her-2 and sensitizes human breast cancer cells to trastuzumab, taxotere, gemcitabine, and epothilone B

29 September 2017

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General Methods for Analysis of Sequential “n-step” Kinetic Mechanisms: Application to Single Turnover Kinetics of Helicase-Catalyzed DNA Unwinding

29 September 2017

1 reference

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Kinetic mechanism for formation of the active, dimeric UvrD helicase-DNA complex

29 September 2017

1 reference

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The structure of DNA in the nucleosome core

29 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810488

Evidence for DNA translocation by the ISWI chromatin-remodeling enzyme

29 September 2017

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Direct measurement of single-stranded DNA translocation by PcrA helicase using the fluorescent base analogue 2-aminopurine

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810488

Nucleosome mobilization and positioning by ISWI-containing chromatin-remodeling factors

29 September 2017

1 reference

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Defining the roles of individual residues in the single-stranded DNA binding site of PcrA helicase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810488

Recognition of template-primer and gapped DNA substrates by the human DNA polymerase beta

29 September 2017

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Uncoupling DNA translocation and helicase activity in PcrA: direct evidence for an active mechanism.

29 September 2017

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Perturbation of nucleosome core structure by the SWI/SNF complex persists after its detachment, enhancing subsequent transcription factor binding

29 September 2017

1 reference

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Direct, real-time measurement of rapid inorganic phosphate release using a novel fluorescent probe and its application to actomyosin subfragment 1 ATPase

29 September 2017

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Binding of Escherichia coli RNA polymerase to T7 DNA. Displacement of holoenzyme from promoter complexes by heparin

29 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810488

A nonuniform stepping mechanism for E. coli UvrD monomer translocation along single-stranded DNA

29 September 2017

1 reference

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Mechanism of ATP-dependent translocation of E.coli UvrD monomers along single-stranded DNA.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810488

The ISWI chromatin-remodeling protein is required for gene expression and the maintenance of higher order chromatin structure in vivo

2 June 2018

1 reference

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Eukaryotic Transcription: An Interlaced Network of Transcription Factors and Chromatin-Modifying Machines

2 June 2018

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Interaction of GTPase-activating protein with p21ras, measured using a continuous assay for inorganic phosphate release

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810488

The chromatin-remodeling enzyme ACF is an ATP-dependent DNA length sensor that regulates nucleosome spacing

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810488

Probing SWI/SNF remodeling of the nucleosome by unzipping single DNA molecules

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810488

Chromatin remodeling through directional DNA translocation from an internal nucleosomal site

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810488

Fluorescence stopped-flow studies of single turnover kinetics of E.coli RecBCD helicase-catalyzed DNA unwinding.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810488

DNA translocation and nucleosome remodeling assays by the RSC chromatin remodeling complex

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810488

Molecular biology. Breaking the silence

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810488

A Dimer of Escherichia coli UvrD is the active form of the helicase in vitro

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810488

DNA unwinding step-size of E. coli RecBCD helicase determined from single turnover chemical quenched-flow kinetic studies

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810488

Kinetic mechanism of direct transfer of Escherichia coli SSB tetramers between single-stranded DNA molecules

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810488

T7 DNA helicase: a molecular motor that processively and unidirectionally translocates along single-stranded DNA.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810488

Multiple-step kinetic mechanisms of the ssDNA recognition process by human polymerase beta in its different ssDNA binding modes

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810488

Functional Delineation of Three Groups of the ATP-dependent Family of Chromatin Remodeling Enzymes

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810488

Demonstration of unidirectional single-stranded DNA translocation by PcrA helicase: measurement of step size and translocation speed

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810488

Activated RSC–Nucleosome Complex and Persistently Altered Form of the Nucleosome

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810488

Kinetic measurement of the step size of DNA unwinding by Escherichia coli UvrD helicase

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810488

Multiple-step kinetic mechanism of DNA-independent ATP binding and hydrolysis by Escherichia coli replicative helicase DnaB protein: quantitative analysis using the rapid quench-flow method

27 November 2018

1 reference

12 December 2020

Mechanisms for ATP-dependent chromatin remodelling

1 reference

12 December 2020

Characterization of ribonucleic acid polymerase-T7 promoter binary complexes

1 reference

12 December 2020

Kinetic mechanism of DNA binding and DNA-induced dimerization of the Escherichia coli Rep helicase

1 reference

12 December 2020

Identifiers

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