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A single SR-like protein, Npl3, promotes pre-mRNA splicing in budding yeast
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scholarly article
1 reference
stated in
PubMed
PubMed ID
19061647
retrieved
1 December 2016
title
A single SR-like protein, Npl3, promotes pre-mRNA splicing in budding yeast
(English)
1 reference
stated in
PubMed
PubMed ID
19061647
retrieved
1 December 2016
main subject
cell biology
0 references
MRNA-binding protein NPL3 YDR432W
1 reference
stated in
GOA release 2020-03-11
author
Nevan Krogan
series ordinal
2
object named as
Nevan J Krogan
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author name string
Tracy L Kress
series ordinal
1
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language of work or name
English
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publication date
5 December 2008
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published in
Molecular Cell
1 reference
stated in
PubMed
PubMed ID
19061647
retrieved
1 December 2016
volume
32
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page(s)
727-34
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issue
5
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cites work
Unphosphorylated SR-like protein Npl3 stimulates RNA polymerase II elongation
1 reference
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PubMed Central
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20 March 2017
Structure of the Yeast SR Protein Npl3 and Interaction with mRNA 3′-End Processing Signals
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PubMed Central
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20 March 2017
Polyadenylation site choice in yeast is affected by competition between Npl3 and polyadenylation factor CFI.
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PubMed Central
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20 March 2017
Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile
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PubMed Central
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20 March 2017
Npl3 is an antagonist of mRNA 3' end formation by RNA polymerase II.
1 reference
stated in
PubMed Central
reference URL
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20 March 2017
Functional specificity of shuttling hnRNPs revealed by genome-wide analysis of their RNA binding profiles
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20 March 2017
Global mapping of the yeast genetic interaction network
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20 March 2017
Differential export requirements for shuttling serine/arginine-type mRNA-binding proteins
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PubMed Central
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20 March 2017
Global analysis of protein localization in budding yeast
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PubMed Central
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20 March 2017
Identification of Gbp2 as a novel poly(A)+ RNA-binding protein involved in the cytoplasmic delivery of messenger RNAs in yeast
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PubMed Central
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20 March 2017
Proteomics of the eukaryotic transcription machinery: identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry
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PubMed Central
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20 March 2017
Functional organization of the yeast proteome by systematic analysis of protein complexes
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PubMed Central
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20 March 2017
Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae
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PubMed Central
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20 March 2017
Messenger RNAs are recruited for nuclear export during transcription
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PubMed Central
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20 March 2017
Phosphorylation by Sky1p promotes Npl3p shuttling and mRNA dissociation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
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20 March 2017
A yeast intronic splicing enhancer and Nam8p are required for Mer1p-activated splicing.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
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20 March 2017
Conservation in budding yeast of a kinase specific for SR splicing factors
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
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20 March 2017
The yeast U2A'/U2B complex is required for pre-spliceosome formation
1 reference
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PubMed Central
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20 March 2017
CUS2, a yeast homolog of human Tat-SF1, rescues function of misfolded U2 through an unusual RNA recognition motif
1 reference
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PubMed Central
reference URL
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20 March 2017
A comprehensive biochemical and genetic analysis of the yeast U1 snRNP reveals five novel proteins.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
retrieved
20 March 2017
The splicing factor BBP interacts specifically with the pre-mRNA branchpoint sequence UACUAAC.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
retrieved
20 March 2017
In vivo commitment to splicing in yeast involves the nucleotide upstream from the branch site conserved sequence and the Mud2 protein
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
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20 March 2017
SIR2 and SIR4 interactions differ in core and extended telomeric heterochromatin in yeast
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
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20 March 2017
A protein that shuttles between the nucleus and the cytoplasm is an important mediator of RNA export
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
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20 March 2017
The yeast MUD2 protein: an interaction with PRP11 defines a bridge between commitment complexes and U2 snRNP addition
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
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20 March 2017
Identification of a novel component of the nonsense-mediated mRNA decay pathway by use of an interacting protein screen
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
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20 March 2017
Splicing factors SRp20 and 9G8 promote the nucleocytoplasmic export of mRNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
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20 March 2017
Structurally unique yeast and mammalian serine-arginine protein kinases catalyze evolutionarily conserved phosphorylation reactions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
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20 March 2017
Open source clustering software
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
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7 April 2017
Pre-mRNA splicing: awash in a sea of proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
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7 April 2017
Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
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7 April 2017
A DNA integrity network in the yeast Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
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7 April 2017
Protein characterization of Saccharomyces cerevisiae RNA polymerase II after in vivo cross-linking
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
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29 September 2017
Rapid, transcript-specific changes in splicing in response to environmental stress
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
retrieved
29 September 2017
Yeast cap binding complex impedes recruitment of cleavage factor IA to weak termination sites.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
retrieved
29 September 2017
SR proteins function in coupling RNAP II transcription to pre-mRNA splicing.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
retrieved
29 September 2017
Transcript specificity in yeast pre-mRNA splicing revealed by mutations in core spliceosomal components
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
retrieved
29 September 2017
Following temperature stress, export of heat shock mRNA occurs efficiently in cells with mutations in genes normally important for mRNA export
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
retrieved
29 September 2017
A genome-wide analysis indicates that yeast pre-mRNA splicing is predominantly posttranscriptional
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
retrieved
29 September 2017
A strategy for extracting and analyzing large-scale quantitative epistatic interaction data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
retrieved
29 September 2017
RS domains contact splicing signals and promote splicing by a common mechanism in yeast through humans
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
retrieved
29 September 2017
RS domains contact the pre-mRNA throughout spliceosome assembly
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
retrieved
29 September 2017
Yeast shuttling SR proteins Npl3p, Gbp2p, and Hrb1p are part of the translating mRNPs, and Npl3p can function as a translational repressor
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
retrieved
29 September 2017
Arginine methyltransferase affects interactions and recruitment of mRNA processing and export factors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
retrieved
29 September 2017
Broad specificity of SR (serine/arginine) proteins in the regulation of alternative splicing of pre-messenger RNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
retrieved
29 September 2017
Cotranscriptional recruitment of the U1 snRNP to intron-containing genes in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
retrieved
29 September 2017
Intron status and 3'-end formation control cotranscriptional export of mRNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
retrieved
29 September 2017
Test of intron predictions reveals novel splice sites, alternatively spliced mRNAs and new introns in meiotically regulated genes of yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
retrieved
29 September 2017
Splicing of the meiosis-specific HOP2 transcript utilizes a unique 5' splice site
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
retrieved
29 September 2017
SR-related proteins and the processing of messenger RNA precursors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
retrieved
29 September 2017
Prp43: An RNA helicase-like factor involved in spliceosome disassembly
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
retrieved
29 September 2017
The essential yeast RNA binding protein Np13p is methylated
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
retrieved
29 September 2017
Potential RNA binding proteins in Saccharomyces cerevisiae identified as suppressors of temperature-sensitive mutations in NPL3
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
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29 September 2017
Isolation and characterization of Saccharomyces cerevisiae mRNA transport-defective (mtr) mutants
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
retrieved
29 September 2017
A yeast protein that bidirectionally affects nucleocytoplasmic transport.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
retrieved
29 September 2017
Requirement of protein factors and ATP for the disassembly of the splicesome after mRNA splicing reaction
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
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29 September 2017
Widespread impact of nonsense-mediated mRNA decay on the yeast intronome
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
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2 June 2018
Cotranscriptional spliceosome assembly dynamics and the role of U1 snRNA:5'ss base pairing in yeast
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
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2 June 2018
The ribosomal translocase homologue Snu114p is involved in unwinding U4/U6 RNA during activation of the spliceosome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
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2 June 2018
Meiosis-specific RNA splicing in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
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2 June 2018
Cotranscriptional spliceosome assembly occurs in a stepwise fashion and requires the cap binding complex.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
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27 November 2018
Exploring functional relationships between components of the gene expression machinery.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
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27 November 2018
SR splicing factors serve as adapter proteins for TAP-dependent mRNA export
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2677966
retrieved
27 November 2018
Identifiers
DOI
10.1016/J.MOLCEL.2008.11.013
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PMCID
2677966
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PubMed ID
19061647
1 reference
stated in
PubMed
PubMed ID
19061647
retrieved
1 December 2016
ResearchGate publication ID
23628714
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