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A panoramic view of yeast noncoding RNA processing
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scholarly article
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stated in
PubMed
PubMed ID
12837249
retrieved
1 December 2016
title
A panoramic view of yeast noncoding RNA processing
(English)
1 reference
stated in
PubMed
PubMed ID
12837249
retrieved
1 December 2016
author
Sam T. Roweis
series ordinal
21
object named as
Sam Roweis
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Gerard Cagney
object named as
Gerard Cagney
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5
0 references
Mark D. Robinson
object named as
Mark D Robinson
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2
0 references
Andrew Emili
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23
object named as
Andrew Emili
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Quaid D Morris
object named as
Quaid Morris
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6
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Nevan Krogan
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4
object named as
Nevan J Krogan
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Brendan J. Frey
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22
object named as
Brendan J Frey
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author name string
Wen Tao Peng
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1
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Sanie Mnaimneh
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3
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Armaity P Davierwala
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7
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Jörg Grigull
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8
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Xueqi Yang
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9
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Wen Zhang
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10
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Nicholas Mitsakakis
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11
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Owen W Ryan
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12
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Nira Datta
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13
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Vladimir Jojic
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14
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Chris Pal
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15
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Veronica Canadien
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16
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Dawn Richards
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17
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Bryan Beattie
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18
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Lani F Wu
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19
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Steven J Altschuler
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20
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Jack F Greenblatt
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24
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Timothy R Hughes
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25
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language of work or name
English
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publication date
27 June 2003
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published in
Cell
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PubMed
PubMed ID
12837249
retrieved
1 December 2016
volume
113
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page(s)
919-33
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issue
7
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cites work
Functions of the exosome in rRNA, snoRNA and snRNA synthesis
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Directed proteomic analysis of the human nucleolus
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Analyzing yeast protein-protein interaction data obtained from different sources
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Identification of a 60S preribosomal particle that is closely linked to nuclear export.
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Rrp6p, the yeast homologue of the human PM-Scl 100-kDa autoantigen, is essential for efficient 5.8 S rRNA 3' end formation
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Knowledge-based analysis of microarray gene expression data by using support vector machines
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Yeast RNase III as a key processing enzyme in small nucleolar RNAs metabolism.
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Isolation and characterization of the gene encoding yeast debranching enzyme
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Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays
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A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis
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Non–coding RNA genes and the modern RNA world
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Computational genomics of noncoding RNA genes
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Cluster analysis and display of genome-wide expression patterns
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RNase III cleaves eukaryotic preribosomal RNA at a U3 snoRNP-dependent site
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Saccharomyces cerevisiae C1D is implicated in both non-homologous DNA end joining and homologous recombination.
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Making ribosomes
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Yeast snoRNA accumulation relies on a cleavage-dependent/polyadenylation-independent 3'-processing apparatus
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Ssf1p prevents premature processing of an early pre-60S ribosomal particle
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Purified box C/D snoRNPs are able to reproduce site-specific 2'-O-methylation of target RNA in vitro
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7 January 2021
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A set of vectors with a tetracycline-regulatable promoter system for modulated gene expression in Saccharomyces cerevisiae
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Functional organization of the yeast proteome by systematic analysis of protein complexes
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Bms1p, a novel GTP-binding protein, and the related Tsr1p are required for distinct steps of 40S ribosome biogenesis in yeast
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Functional profiling of the Saccharomyces cerevisiae genome
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90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors
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Composition and functional characterization of yeast 66S ribosome assembly intermediates.
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A concise guide to cDNA microarray analysis
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Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
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The yeast RNA1 gene product necessary for RNA processing is located in the cytosol and apparently excluded from the nucleus
1 reference
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Functional discovery via a compendium of expression profiles
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Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer
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RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse
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Saccharomyces Genome Database.
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7 January 2021
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A comprehensive two-hybrid analysis to explore the yeast protein interactome
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Relics from the RNA world
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The essential protein fap7 is involved in the oxidative stress response of Saccharomyces cerevisiae
1 reference
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Large-scale transcriptional activity in chromosomes 21 and 22
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Protein trans-acting factors involved in ribosome biogenesis in Saccharomyces cerevisiae
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RNA polymerase II elongation factors of Saccharomyces cerevisiae: a targeted proteomics approach
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Yeast Rnt1p is required for cleavage of the pre-ribosomal RNA in the 3' ETS but not the 5' ETS.
1 reference
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https://api.crossref.org/works/10.1016%2FS0092-8674%2803%2900466-5
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7 January 2021
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Subcellular localization of the yeast proteome
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https://api.crossref.org/works/10.1016%2FS0092-8674%2803%2900466-5
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7 January 2021
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NSR1 is required for pre-rRNA processing and for the proper maintenance of steady-state levels of ribosomal subunits
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MIPS: a database for genomes and protein sequences
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The pre-ribosomal network
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The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'-->5' exoribonucleases
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The final cut. The importance of tRNA 3'-processing.
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Quantitative assessment of the use of modified nucleoside triphosphates in expression profiling: differential effects on signal intensities and impacts on expression ratios
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60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm
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Gene expression analysis using oligonucleotide arrays produced by maskless photolithography
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7 January 2021
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The plurifunctional nucleolus
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7 January 2021
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ERB1, the yeast homolog of mammalian Bop1, is an essential gene required for maturation of the 25S and 5.8S ribosomal RNAs
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7 January 2021
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A generic protein purification method for protein complex characterization and proteome exploration
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7 January 2021
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FunSpec: a web-based cluster interpreter for yeast
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7 January 2021
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Yeast Krr1p physically and functionally interacts with a novel essential Kri1p, and both proteins are required for 40S ribosome biogenesis in the nucleolus
1 reference
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7 January 2021
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Nog2p, a putative GTPase associated with pre-60S subunits and required for late 60S maturation steps
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FS0092-8674%2803%2900466-5
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7 January 2021
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Experimental annotation of the human genome using microarray technology
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7 January 2021
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Nob1p is required for biogenesis of the 26S proteasome and degraded upon its maturation in Saccharomyces cerevisiae
1 reference
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https://api.crossref.org/works/10.1016%2FS0092-8674%2803%2900466-5
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7 January 2021
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A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
1 reference
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https://api.crossref.org/works/10.1016%2FS0092-8674%2803%2900466-5
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7 January 2021
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Three conserved members of the RNase D family have unique and overlapping functions in the processing of 5S, 5.8S, U4, U5, RNase MRP and RNase P RNAs in yeast
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https://api.crossref.org/works/10.1016%2FS0092-8674%2803%2900466-5
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7 January 2021
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Ribosome synthesis in Saccharomyces cerevisiae
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7 January 2021
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Box C/D small nucleolar RNA trafficking involves small nucleolar RNP proteins, nucleolar factors and a novel nuclear domain
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7 January 2021
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Guided tours: from precursor snoRNA to functional snoRNP.
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https://api.crossref.org/works/10.1016%2FS0092-8674%2803%2900466-5
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7 January 2021
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Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters
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7 January 2021
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A conserved family of Saccharomyces cerevisiae synthases effects dihydrouridine modification of tRNA
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Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation
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7 January 2021
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DOI
10.1016/S0092-8674(03)00466-5
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PubMed ID
12837249
1 reference
stated in
PubMed
PubMed ID
12837249
retrieved
1 December 2016
ResearchGate publication ID
10682010
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