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Comprehensive mutational analysis of yeast DEXD/H box RNA helicases required for small ribosomal subunit synthesis
scientific article
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scholarly article
1 reference
stated in
PubMed
PubMed ID
16449634
retrieved
1 December 2016
title
Comprehensive mutational analysis of yeast DEXD/H box RNA helicases required for small ribosomal subunit synthesis
(English)
1 reference
stated in
PubMed
PubMed ID
16449634
retrieved
1 December 2016
main subject
cell biology
0 references
RNA analysis
1 reference
based on heuristic
inferred from title
RNA-dependent ATPase RRP3 YHR065C
1 reference
stated in
GOA release 2020-03-11
ATP-dependent RNA helicase ECM16 YMR128W
1 reference
stated in
GOA release 2020-03-11
ATP-dependent RNA helicase FAL1 YDR021W
1 reference
stated in
GOA release 2020-03-11
RNA helicase YKL078W
1 reference
stated in
GOA release 2020-03-11
mutational analysis
1 reference
based on heuristic
inferred from title
author
Franziska Bleichert
series ordinal
3
0 references
Sander Granneman
series ordinal
1
0 references
Kara A. Bernstein
object named as
Kara A Bernstein
series ordinal
2
0 references
Susan Baserga
series ordinal
4
object named as
Susan J Baserga
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language of work or name
English
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publication date
February 2006
0 references
published in
Molecular and Cellular Biology
1 reference
stated in
PubMed
PubMed ID
16449634
retrieved
1 December 2016
volume
26
0 references
page(s)
1183-94
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issue
4
0 references
cites work
Has1p, a member of the DEAD-box family, is required for 40S ribosomal subunit biogenesis in Saccharomyces cerevisiae.
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PubMed Central
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High-definition macromolecular composition of yeast RNA-processing complexes
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90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors
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PubMed Central
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20 March 2017
A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis
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Making ribosomes
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PubMed Central
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Prp43 is an essential RNA-dependent ATPase required for release of lariat-intron from the spliceosome
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The sigma(70)-like motif: a eukaryotic RNA binding domain unique to a superfamily of proteins required for ribosome biogenesis
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20 March 2017
Helicase structure and mechanism
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PubMed Central
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Functional organization of the yeast proteome by systematic analysis of protein complexes
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PubMed Central
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20 March 2017
Characterization and mutational analysis of yeast Dbp8p, a putative RNA helicase involved in ribosome biogenesis
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PubMed Central
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Identification and characterization of yUAP/Sub2p, a yeast homolog of the essential human pre-mRNA splicing factor hUAP56
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PubMed Central
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20 March 2017
Dhr1p, a putative DEAH-box RNA helicase, is associated with the box C+D snoRNP U3.
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A generic protein purification method for protein complex characterization and proteome exploration
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Imp3p and Imp4p, two specific components of the U3 small nucleolar ribonucleoprotein that are essential for pre-18S rRNA processing
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Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families.
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Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
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20 March 2017
Prp22, a DExH-box RNA helicase, plays two distinct roles in yeast pre-mRNA splicing
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PubMed Central
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20 March 2017
Fal1p is an essential DEAD-box protein involved in 40S-ribosomal-subunit biogenesis in Saccharomyces cerevisiae
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PubMed Central
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20 March 2017
Mpp10p, a U3 small nucleolar ribonucleoprotein component required for pre-18S rRNA processing in yeast
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PubMed Central
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20 March 2017
The rRNA-processing function of the yeast U14 small nucleolar RNA can be rescued by a conserved RNA helicase-like protein
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PubMed Central
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20 March 2017
Rok1p is a putative RNA helicase required for rRNA processing
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PubMed Central
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20 March 2017
ATP hydrolysis by initiation factor 4A is required for translation initiation in Saccharomyces cerevisiae
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PubMed Central
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20 March 2017
Mutational analysis of a DEAD box RNA helicase: the mammalian translation initiation factor eIF-4A
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PubMed Central
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20 March 2017
Ribosome assembly in eukaryotes
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PubMed Central
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Pre-ribosomes on the road from the nucleolus to the cytoplasm
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PubMed Central
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7 April 2017
DExD/H box RNA helicases: from generic motors to specific dissociation functions
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PubMed Central
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7 April 2017
A set of vectors with a tetracycline-regulatable promoter system for modulated gene expression in Saccharomyces cerevisiae
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Comprehensive mutational analysis of yeast DEXD/H box RNA helicases involved in large ribosomal subunit biogenesis
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PubMed Central
reference URL
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29 September 2017
U3 snoRNP and Rrp5p associate independently with Saccharomyces cerevisiae 35S pre-rRNA, but Rrp5p is essential for association of Rok1p
1 reference
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PubMed Central
reference URL
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29 September 2017
The newly discovered Q motif of DEAD-box RNA helicases regulates RNA-binding and helicase activity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367182
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29 September 2017
Ribosome biogenesis: of knobs and RNA processing
1 reference
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PubMed Central
reference URL
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29 September 2017
The Q motif: a newly identified motif in DEAD box helicases may regulate ATP binding and hydrolysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367182
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29 September 2017
ATP-dependent remodeling of the spliceosome: intragenic suppressors of release-defective mutants of Saccharomyces cerevisiae Prp22
1 reference
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PubMed Central
reference URL
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29 September 2017
A new twist on RNA helicases: DExH/D box proteins as RNPases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367182
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29 September 2017
RNA helicase dynamics in pre-mRNA splicing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367182
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29 September 2017
Dominant negative mutants of the yeast splicing factor Prp2 map to a putative cleft region in the helicase domain of DExD/H-box proteins.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367182
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29 September 2017
ATP hydrolysis activity of the DEAD box protein Rok1p is required for in vivo ROK1 function
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367182
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29 September 2017
Mutational analysis of the yeast DEAH-box splicing factor Prp16.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367182
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29 September 2017
18S rRNA processing requires the RNA helicase-like protein Rrp3.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367182
retrieved
29 September 2017
The HRIGRXXR region of the DEAD box RNA helicase eukaryotic translation initiation factor 4A is required for RNA binding and ATP hydrolysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367182
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29 September 2017
A dominant negative mutation in the conserved RNA helicase motif 'SAT' causes splicing factor PRP2 to stall in spliceosomes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367182
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29 September 2017
Mutation of lysine-48 to arginine in the yeast RAD3 protein abolishes its ATPase and DNA helicase activities but not the ability to bind ATP.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367182
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29 September 2017
Functional inactivation of genes by dominant negative mutations
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367182
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29 September 2017
Translation initiation factor 4A from Saccharomyces cerevisiae: analysis of residues conserved in the D-E-A-D family of RNA helicases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367182
retrieved
29 September 2017
A dominant negative mutation in a spliceosomal ATPase affects ATP hydrolysis but not binding to the spliceosome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367182
retrieved
29 September 2017
Active disruption of an RNA-protein interaction by a DExH/D RNA helicase
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367182
retrieved
27 November 2018
Alteration of the nucleoside triphosphate (NTP) catalytic domain within Escherichia coli recA protein attenuates NTP hydrolysis but not joint molecule formation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1367182
retrieved
27 November 2018
Functional domains of the yeast splicing factor Prp22p
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/16449634
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Yeast Rad51 recombinase mediates polar DNA strand exchange in the absence of ATP hydrolysis
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/16449634
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Characterization of dominant-negative mutants of the DEAH-box splicing factors Prp22 and Prp16
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/16449634
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1128/MCB.26.4.1183-1194.2006
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1310912
Fatcat ID
release_dzuefrcbs5aqhksfbdf3k3sgsm
1 reference
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Fatcat
reference URL
https://api.fatcat.wiki/v0/release/dzuefrcbs5aqhksfbdf3k3sgsm
retrieved
24 November 2022
based on heuristic
mapped directly with Wikidata item
OpenCitations bibliographic resource ID
1310912
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1310912
PMCID
1367182
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1310912
PubMed ID
16449634
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1310912
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