(Q28475165)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19343224%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

title

Genome-wide functional divergence after the symbiosis of proteobacteria with insects unraveled through a novel computational approach (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19343224%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

main subject

computational biology

0 references

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19343224%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

Tom A. Williams

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19343224%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

Mario A. Fares

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19343224%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

author name string

Christina Toft

series ordinal

1

0 references

language of work or name

English

0 references

publication date

3 April 2009

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19343224%20AND%20SRC:MED&resulttype=core&format=json

PLOS Computational Biology

25 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19343224%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

volume

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19343224%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

issue

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19343224%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

page(s)

e1000344

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19343224%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

25 January 2020

copyright license

start time

3 April 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Nutritional upgrading for omnivorous carpenter ants by the endosymbiont Blochmannia

1 reference

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19 March 2017

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Thermodynamics of neutral protein evolution

19 March 2017

1 reference

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A small microbial genome: the end of a long symbiotic relationship?

19 March 2017

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Relevance of the endosymbiosis of Blochmannia floridanus and carpenter ants at different stages of the life cycle of the host

19 March 2017

1 reference

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SplitTester: software to identify domains responsible for functional divergence in protein family

19 March 2017

1 reference

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Nutritional interactions in insect-microbial symbioses: aphids and their symbiotic bacteria Buchnera

19 March 2017

1 reference

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The genome sequence of Blochmannia floridanus: comparative analysis of reduced genomes

19 March 2017

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Reductive genome evolution in Buchnera aphidicola

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Endosymbiotic bacteria: groEL buffers against deleterious mutations

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Extreme genome reduction in Buchnera spp.: toward the minimal genome needed for symbiotic life

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Heterotachy, an important process of protein evolution

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

KEGG: kyoto encyclopedia of genes and genomes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Preservation of duplicate genes by complementary, degenerative mutations

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

A genomic perspective on protein families

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Accelerated evolution and Muller's rachet in endosymbiotic bacteria

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Intraspecific variation in symbiont genomes: bottlenecks and the aphid-buchnera association

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Deleterious mutations destabilize ribosomal RNA in endosymbiotic bacteria

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Evolution in bacteria: evidence for a universal substitution rate in cellular genomes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Looking for Darwin in all the wrong places: the misguided quest for positive selection at the nucleotide sequence level

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Widespread positive selection in synonymous sites of mammalian genes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Proportion of solvent-exposed amino acids in a protein and rate of protein evolution.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Hundreds of flagellar basal bodies cover the cell surface of the endosymbiotic bacterium Buchnera aphidicola sp. strain APS.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Hearing silence: non-neutral evolution at synonymous sites in mammals

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Why highly expressed proteins evolve slowly

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Mutational and selective pressures on codon and amino acid usage in Buchnera, endosymbiotic bacteria of aphids.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Evolution of duplicate genes versus genetic robustness against null mutations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Inference of selection from multiple species alignments

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

The evolution of the heat-shock protein GroEL from Buchnera, the primary endosymbiont of aphids, is governed by positive selection

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Predicting functional divergence in protein evolution by site-specific rate shifts

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Microinjection and growth of bacteria in the cytosol of mammalian host cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Systematic relationships and cospeciation of bacterial endosymbionts and their carpenter ant host species: proposal of the new taxon Candidatus Blochmannia gen. nov.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Evolution by the birth-and-death process in multigene families of the vertebrate immune system

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Intracellular endosymbiotic bacteria of Camponotus species (carpenter ants): systematics, evolution and ultrastructural characterization

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

The coevolution of gene family trees

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Mutation accumulation in transfer RNAs: molecular evidence for Muller's ratchet in mitochondrial genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Punctuated equilibrium comes of age.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Invasion and maintenance of a gene duplication

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

The evolution of the flagellar assembly pathway in endosymbiotic bacterial genomes.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Genome evolution and functional divergence in Yersinia

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Evidence of positively selected sites in mammalian alpha-defensins.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Sequence evolution in bacterial endosymbionts having extreme base compositions

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Evolutionary rates for tuf genes in endosymbionts of aphids

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Episodic adaptive evolution of primate lysozymes

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

The evolution of functionally novel proteins after gene duplication.

2 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000344

21 January 2018

Ecological speciation

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000344

Phylogeny and radiation of pollination systems in DISA (Orchidaceae).

21 January 2018

2 references

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000344

21 January 2018

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Reductive evolution of resident genomes.

27 November 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000344

Decay of mutualistic potential in aphid endosymbionts through silencing of biosynthetic loci: Buchnera of Diuraphis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000344

Extremely low levels of genetic polymorphism in endosymbionts (Buchnera) of aphids (Pemphigus).

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000344

Nutritional enhancement of host plants by aphids - a comparison of three aphid species on grasses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000344

Maximum-likelihood approach for gene family evolution under functional divergence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000344

A simple statistical method for estimating type-II (cluster-specific) functional divergence of protein sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000344

The root of the tree of life in the light of the covarion model

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000344

Towards realistic codon models: among site variability and dependency of synonymous and non-synonymous rates

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000344

Large-scale prediction of function shift in protein families with a focus on enzymatic function

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000344

Selection for translational robustness in Buchnera aphidicola, endosymbiotic bacteria of aphids

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2659769

Statistical methods for testing functional divergence after gene duplication

27 November 2018

1 reference

12 December 2020

Nonhomogeneous model of sequence evolution indicates independent origins of primary endosymbionts within the enterobacteriales (gamma-Proteobacteria)

1 reference

12 December 2020

Evidence for Purifying Selection Against Synonymous Mutations in Mammalian Exonic Splicing Enhancers

1 reference

12 December 2020

Accumulation of Deleterious Mutations in Endosymbionts: Muller's Ratchet with Two Levels of Selection

1 reference

12 December 2020

Rapid evolution of goat and sheep globin genes following gene duplication

1 reference

12 December 2020

Mutation accumulation in nuclear, organelle, and prokaryotic transfer RNA genes

1 reference

12 December 2020

10.1371/JOURNAL.PCBI.1000344

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19343224%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

DBLP publication ID

journals/ploscb/ToftWF09

1 reference

DBLP Dataset 2021-01-02

release_eccyy2fzovdv3gygk2wrng2ezy

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/eccyy2fzovdv3gygk2wrng2ezy

24 November 2022

mapped directly with Wikidata item

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19343224%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

PubMed publication ID

19343224

1 reference