(Q28477393)

6

0 references

Keith A. Crandall

object named as

Keith A Crandall

4

0 references

author name string

Marcos Pérez-Losada

1

0 references

David V Jobes

2

0 references

Faruk Sinangil

3

0 references

Phillip W Berman

Creative Commons Attribution 4.0 International

7

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language of work or name

English

0 references

publication date

10 March 2011

0 references

published in

PLOS One

0 references

volume

6

0 references

issue

3

0 references

page(s)

e16902

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copyright license

start time

10 March 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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19 March 2017

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19 March 2017

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19 March 2017

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Relaxed phylogenetics and dating with confidence

19 March 2017

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Bayesian coalescent inference of past population dynamics from molecular sequences

19 March 2017

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MAFFT version 5: improvement in accuracy of multiple sequence alignment

19 March 2017

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Integrating HIV prevention and treatment: from slogans to impact

19 March 2017

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MrBayes 3: Bayesian phylogenetic inference under mixed models

19 March 2017

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Timing the ancestor of the HIV-1 pandemic strains

19 March 2017

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Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

19 March 2017

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A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

19 March 2017

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Pairwise comparisons of mitochondrial DNA sequences in subdivided populations and implications for early human evolution.

19 March 2017

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HyPhy: hypothesis testing using phylogenies

19 March 2017

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Vaccination with ALVAC and AIDSVAX to prevent HIV-1 infection in Thailand

23 March 2017

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Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection

7 April 2017

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Epidemiological study of phylogenetic transmission clusters in a local HIV-1 epidemic reveals distinct differences between subtype B and non-B infections

7 April 2017

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Phase III HIV vaccine trial in Thailand: a step toward a protective vaccine for HIV

29 September 2017

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Genotypic characterization of HIV type 1 env gp160 sequences from three regions in Thailand.

29 September 2017

1 reference

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Quantifying differences in the tempo of human immunodeficiency virus type 1 subtype evolution

29 September 2017

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Ethnic differences in the adaptation rate of HIV gp120 from a vaccine trial

29 September 2017

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Evolutionary analysis of the dynamics of viral infectious disease

29 September 2017

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The impact of transmission clusters on primary drug resistance in newly diagnosed HIV-1 infection

29 September 2017

1 reference

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Trends in three decades of HIV/AIDS epidemic in Thailand by nonparametric backcalculation method

29 September 2017

1 reference

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HIV-1 transmission cluster with T215D revertant mutation among newly diagnosed patients from the Basque Country, Spain

29 September 2017

1 reference

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Transmission networks of drug resistance acquired in primary/early stage HIV infection

29 September 2017

1 reference

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The challenge of HIV-1 subtype diversity

29 September 2017

1 reference

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The economics of effective AIDS treatment in Thailand

29 September 2017

1 reference

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High rates of forward transmission events after acute/early HIV-1 infection

29 September 2017

1 reference

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Randomized, double-blind, placebo-controlled efficacy trial of a bivalent recombinant glycoprotein 120 HIV-1 vaccine among injection drug users in Bangkok, Thailand

29 September 2017

1 reference

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Estimating diversifying selection and functional constraint in the presence of recombination

29 September 2017

1 reference

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An automated genotyping system for analysis of HIV-1 and other microbial sequences

29 September 2017

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29 September 2017

1 reference

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The molecular epidemiology of HIV-1 in South and East Asia

29 September 2017

1 reference

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Comparative study of adaptive molecular evolution in different human immunodeficiency virus groups and subtypes

29 September 2017

1 reference

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On the use of star-shaped genealogies in inference of coalescence times.

29 September 2017

1 reference

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Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites.

29 September 2017

1 reference

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Safety and immunogenicity of combinations of recombinant subtype E and B human immunodeficiency virus type 1 envelope glycoprotein 120 vaccines in healthy Thai adults.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053363

Evolution and diversity of HIV-1 in Africa--a review.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053363

Modeling dynamic and network heterogeneities in the spread of sexually transmitted diseases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053363

A coalescent-based method for detecting and estimating recombination from gene sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053363

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053363

A recent outbreak of human immunodeficiency virus type 1 infection in southern China was initiated by two highly homogeneous, geographically separated strains, circulating recombinant form AE and a novel BC recombinant

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053363

AIDSVAX (MN) in Bangkok injecting drug users: a report on safety and immunogenicity, including macrophage-tropic virus neutralization

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053363

Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053363

Modelling the spread of HIV in social networks of injecting drug users

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053363

A computer program designed to screen rapidly for HIV type 1 intersubtype recombinant sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053363

Impact of Thailand's HIV-control programme as indicated by the decline of sexually transmitted diseases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053363

The evolving molecular epidemiology of HIV-1 envelope subtypes in injecting drug users in Bangkok, Thailand: implications for HIV vaccine trials

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053363

Determination of HIV-1 subtypes in injecting drug users in Bangkok, Thailand, using peptide-binding enzyme immunoassay and heteroduplex mobility assay: evidence of increasing infection with HIV-1 subtype E.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053363

The epidemiology of HIV infection and AIDS in Thailand

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053363

Genetic variants of HIV-1 in Thailand

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053363

Phylodynamics of HIV-1 from a phase-III AIDS vaccine trial in North America

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053363

Social network dynamics and HIV transmission

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053363

Diversity of the human immunodeficiency virus type 1 envelope glycoprotein in San Francisco Men's Health Study participants

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053363

HIV type 1 in Thailand, 1994-1995: persistence of two subtypes with low genetic diversity

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053363

Thailand: AIDS crisis looms

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053363

A report of three cases of AIDS in Thailand.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053363

A new circulating recombinant form, CRF15_01B, reinforces the linkage between IDU and heterosexual epidemics in Thailand

4 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016902

The changing molecular epidemiology of HIV type 1 among northern Thai drug users, 1999 to 2002.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016902

Genetic characterization of incident HIV type 1 subtype E and B strains from a prospective cohort of injecting drug users in Bangkok, Thailand

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016902

First CRF01_AE/B recombinant of HIV-1 is found in Thailand

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016902

Heterosexually acquired CRF01_AE/B recombinant HIV type 1 found in Thailand

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016902

The spread of HIV-1 subtypes B and CRF01_AE among injecting drug users in Bangkok, Thailand.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016902

Transmission of HIV-1 during primary infection: relationship to sexual risk and sexually transmitted infections.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016902

Molecular epidemiology of HIV-1 in St Petersburg, Russia: predominance of subtype A, former Soviet Union variant, and identification of intrasubtype subclusters

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016902

High divergence within the major HIV type 1 subtype B epidemic in Panama

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016902

Lack of increased HIV risk behavior among injection drug users participating in the AIDSVAX B/E HIV vaccine trial in Bangkok, Thailand

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016902

Placebo-controlled phase 3 trial of a recombinant glycoprotein 120 vaccine to prevent HIV-1 infection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016902

Phylodynamic analysis of the dissemination of HIV-1 CRF01_AE in Vietnam.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016902

Genotypic characterization of CRF01_AE env genes derived from human immunodeficiency virus type 1-infected patients residing in central Thailand

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016902

Analysis of HIV-1 pol sequences from Panama: identification of phylogenetic clusters within subtype B and detection of antiretroviral drug resistance mutations

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016902

A viral sampling design for testing the molecular clock and for estimating evolutionary rates and divergence times

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016902

RDP2: recombination detection and analysis from sequence alignments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016902

A Modified Bootscan Algorithm for Automated Identification of Recombinant Sequences and Recombination Breakpoints

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016902

A new look at the statistical model identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016902

Confidence Limits on Phylogenies: an Approach using the Bootstrap

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016902

GARD: a genetic algorithm for recombination detection

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016902

Recruitment, screening and characteristics of injection drug users participating in the AIDSVAX®B/E HIV vaccine trial, Bangkok, Thailand

21 January 2018

2 references

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016902

21 January 2018

12 December 2020

Genetic characteristics of HIV-1 CRF01_AE strains in four provinces, southern China

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053363

Surveillance of subtype and genetic variation of the circulating strains of HIV-1 in Thailand.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053363

Thailand report: HIV/AIDS surveillance 1998.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3053363

Potential impact of recombination on sitewise approaches for detecting positive natural selection

27 November 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0016902

Molecular epidemiology of HIV Type 1 in preparation for a Phase III prime-boost vaccine trial in Thailand and a new approach to HIV Type 1 genotyping

21 January 2018

1 reference

12 December 2020

Continued high HIV-1 incidence in a vaccine trial preparatory cohort of injection drug users in Bangkok, Thailand

1 reference

12 December 2020

Roles of the Royal Thai Army Medical Department in supporting the country to fight against HIV/AIDS: 18 years of experience and success

1 reference

12 December 2020

The natural history of HIV-1 subtype E infection in young men in Thailand with up to 14 years of follow-up

1 reference

12 December 2020

Amplified HIV transmission and new approaches to HIV prevention

1 reference

12 December 2020

Genetic analysis of incident HIV-1 strains among injection drug users in Bangkok: evidence for multiple transmission clusters during a period of high incidence

1 reference

12 December 2020

New HIV type 1 CRF01_AE/B recombinants displaying unique distribution of breakpoints from incident infections among injecting drug users in Thailand

1 reference

12 December 2020

Transmission networks of HIV-1 among men having sex with men in the Netherlands

1 reference

12 December 2020

Independent introduction of two major HIV-1 genotypes into distinct high-risk populations in Thailand

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0016902

Identifiers

DOI

1 reference

ADS bibcode

2011PLoSO...616902P

0 references

1 reference

1 reference

PubMed publication ID

21423744

1 reference