(Q28543547)

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Whole cell formaldehyde cross-linking simplifies purification of mitochondrial nucleoids and associated proteins involved in mitochondrial gene expression

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Whole cell formaldehyde cross-linking simplifies purification of mitochondrial nucleoids and associated proteins involved in mitochondrial gene expression (English)

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Jolein Gloerich

5

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Jolein Gloerich

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Johannes N Spelbrink

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Johannes N Spelbrink

6

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Nina Rajala

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Fenna Hensen

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Hans J C T Wessels

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Daniel Ives

4

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2015

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10

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2

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e0116726

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Creative Commons Attribution 4.0 International

19 February 2015

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April 2022 Public Data File from Crossref

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MPV17L2 is required for ribosome assembly in mitochondria

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19 March 2017

Quality matters: how does mitochondrial network dynamics and quality control impact on mtDNA integrity?

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19 March 2017

Initial steps in RNA processing and ribosome assembly occur at mitochondrial DNA nucleoids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335056

19 March 2017

A bifunctional protein regulates mitochondrial protein synthesis

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335056

19 March 2017

Mitochondrial ribosomal RNA (rRNA) methyltransferase family members are positioned to modify nascent rRNA in foci near the mitochondrial DNA nucleoid

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335056

19 March 2017

Analysis of 953 human proteins from a mitochondrial HEK293 fraction by complexome profiling

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19 March 2017

Loss-of-function mutations in MGME1 impair mtDNA replication and cause multisystemic mitochondrial disease

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19 March 2017

The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts

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19 March 2017

Insights into RNA biology from an atlas of mammalian mRNA-binding proteins

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19 March 2017

A functional peptidyl-tRNA hydrolase, ICT1, has been recruited into the human mitochondrial ribosome

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19 March 2017

Twinkle mutations associated with autosomal dominant progressive external ophthalmoplegia lead to impaired helicase function and in vivo mtDNA replication stalling

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335056

19 March 2017

The layered structure of human mitochondrial DNA nucleoids

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335056

19 March 2017

Aconitase couples metabolic regulation to mitochondrial DNA maintenance

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335056

19 March 2017

Reconstitution of a minimal mtDNA replisome in vitro

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335056

19 March 2017

The functional organization of mitochondrial genomes in human cells

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335056

19 March 2017

INTRAMITOCHONDRIAL FIBERS WITH DNA CHARACTERISTICS. I. FIXATION AND ELECTRON STAINING REACTIONS

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335056

19 March 2017

Composition and dynamics of human mitochondrial nucleoids

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335056

19 March 2017

Human mitochondrial DNA deletions associated with mutations in the gene encoding Twinkle, a phage T7 gene 4-like protein localized in mitochondria

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19 March 2017

In organello formaldehyde crosslinking of proteins to mtDNA: identification of bifunctional proteins

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19 March 2017

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

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7 April 2017

Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics

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7 April 2017

DEOXYRIBONUCLEIC ACID ASSOCIATED WITH YEAST MITOCHONDRIA.

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29 September 2017

MRM2 and MRM3 are involved in biogenesis of the large subunit of the mitochondrial ribosome.

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29 September 2017

Screen for mitochondrial DNA copy number maintenance genes reveals essential role for ATP synthase

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29 September 2017

Functional genomic analysis of human mitochondrial RNA processing

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29 September 2017

Replication factors transiently associate with mtDNA at the mitochondrial inner membrane to facilitate replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335056

29 September 2017

To be or not to be a nucleoid protein: a comparison of mass-spectrometry based approaches in the identification of potential mtDNA-nucleoid associated proteins

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29 September 2017

Identification of a novel human mitochondrial endo-/exonuclease Ddk1/c20orf72 necessary for maintenance of proper 7S DNA levels

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335056

29 September 2017

Mitochondrial nucleoid interacting proteins support mitochondrial protein synthesis.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335056

29 September 2017

Human C4orf14 interacts with the mitochondrial nucleoid and is involved in the biogenesis of the small mitochondrial ribosomal subunit.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335056

29 September 2017

Actin and myosin contribute to mammalian mitochondrial DNA maintenance.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335056

29 September 2017

Functional organization of mammalian mitochondrial DNA in nucleoids: history, recent developments, and future challenges.

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29 September 2017

Membrane association of mitochondrial DNA facilitates base excision repair in mammalian mitochondria

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29 September 2017

The accessory subunit of mitochondrial DNA polymerase gamma determines the DNA content of mitochondrial nucleoids in human cultured cells

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335056

29 September 2017

BioVenn - a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams

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29 September 2017

The human mitochondrial ribosome recycling factor is essential for cell viability

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29 September 2017

Cristae formation-linking ultrastructure and function of mitochondria

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29 September 2017

Mitochondrial nucleoids undergo remodeling in response to metabolic cues.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335056

29 September 2017

Evolutionary tinkering with mitochondrial nucleoids

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335056

29 September 2017

Expression of catalytic mutants of the mtDNA helicase Twinkle and polymerase POLG causes distinct replication stalling phenotypes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335056

29 September 2017

The AAA+ protein ATAD3 has displacement loop binding properties and is involved in mitochondrial nucleoid organization.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335056

29 September 2017

The organization and inheritance of the mitochondrial genome

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29 September 2017

Organization and dynamics of human mitochondrial DNA.

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29 September 2017

Evidence for a two membrane–spanning autonomous mitochondrial DNA replisome

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29 September 2017

Human mitochondrial DNA is packaged with TFAM.

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29 September 2017

The ATP synthase is involved in generating mitochondrial cristae morphology

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29 September 2017

In vivo functional analysis of the human mitochondrial DNA polymerase POLG expressed in cultured human cells

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29 September 2017

The numbers of individual mitochondrial DNA molecules and mitochondrial DNA nucleoids in yeast are co-regulated by the general amino acid control pathway

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29 September 2017

Characterization of a Xenopus laevis mitochondrial protein with a high affinity for supercoiled DNA

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29 September 2017

Purification and characterization of human mitochondrial transcription factor 1.

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29 September 2017

Association of a protein structure of probable membrane derivation with HeLa cell mitochondrial DNA near its origin of replication

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29 September 2017

Human mitochondrial DNA nucleoids are linked to protein folding machinery and metabolic enzymes at the mitochondrial inner membrane.

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21 January 2018

Utility of formaldehyde cross-linking and mass spectrometry in the study of protein-protein interactions.

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21 January 2018

Microcolumns with self-assembled particle frits for proteomics

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21 January 2018

Characterization of DNA-protein complexes from the mitochondria of Xenopus laevis oocytes

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12 December 2020

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Characterization of a rat liver mitochondrial DNA-protein complex. Replicative intermediates are protected against branch migrational loss

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Mitochondrial DNA. I. Intramitochondrial distribution and structural relations of single- and double-length circular DNA

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10.1371/JOURNAL.PONE.0116726

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2015PLoSO..1016726R

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