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Next-generation genomics: an integrative approach
scientific article (publication date: July 2010)
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scholarly article
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review article
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stated in
Europe PubMed Central
title
Next-generation genomics: an integrative approach
(English)
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main subject
RNA sequencing
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genomics
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based on heuristic
inferred from title
author name string
R David Hawkins
series ordinal
1
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Gary C Hon
series ordinal
2
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Bing Ren
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3
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language of work or name
English
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publication date
July 2010
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published in
Nature Reviews Genetics
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volume
11
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page(s)
476-86
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issue
7
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Cytoscape
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Europe PubMed Central
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9 June 2022
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https://europepmc.org/search?query=(METHODS:'Cytoscape')
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
Biased chromatin signatures around polyadenylation sites and exons
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
Functional identification of tumor-suppressor genes through an in vivo RNA interference screen in a mouse lymphoma model
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
Personalized copy number and segmental duplication maps using next-generation sequencing.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
Nucleosomes are well positioned in exons and carry characteristic histone modifications
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
Specific loss of histone H3 lysine 9 trimethylation and HP1gamma/cohesin binding at D4Z4 repeats is associated with facioscapulohumeral dystrophy (FSHD).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
High-resolution analysis of epigenetic changes associated with X inactivation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
The 8q24 cancer risk variant rs6983267 shows long-range interaction with MYC in colorectal cancer
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
Comparative study on ChIP-seq data: normalization and binding pattern characterization
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
Unlocking the secrets of the genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
Massively parallel exon capture and library-free resequencing across 16 genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
Global mapping of protein-DNA interactions in vivo by digital genomic footprinting
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
ChIP-based methods for the identification of long-range chromatin interactions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
Differential chromatin marking of introns and expressed exons by H3K36me3.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
High-resolution mapping of copy-number alterations with massively parallel sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
Design and analysis of ChIP-seq experiments for DNA-binding proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
An oncogenomics-based in vivo RNAi screen identifies tumor suppressors in liver cancer
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
A genome-wide shRNA screen identifies GAS1 as a novel melanoma metastasis suppressor gene
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
An integrated software system for analyzing ChIP-chip and ChIP-seq data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
Genome-wide high throughput analysis of DNA methylation in eukaryotes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
ChromaSig: a probabilistic approach to finding common chromatin signatures in the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
Inferring causal relationships among different histone modifications and gene expression
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
Genome-wide mapping of allele-specific protein-DNA interactions in human cells.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
An elaborate pathway required for Ras-mediated epigenetic silencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
High-throughput genetic interaction mapping in the fission yeast Schizosaccharomyces pombe
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
Integrating physical and genetic maps: from genomes to interaction networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
Mechanisms regulating imprinted genes in clusters.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
Gene body-specific methylation on the active X chromosome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
Genome-wide prediction of conserved and nonconserved enhancers by histone acetylation patterns
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
Mutant nuclear lamin A leads to progressive alterations of epigenetic control in premature aging
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
Global changes in STAT target selection and transcription regulation upon interferon treatments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
High-throughput localization of functional elements by quantitative chromatin profiling
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
Active chromatin domains are defined by acetylation islands revealed by genome-wide mapping
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
Protein interaction maps for model organisms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
3 June 2018
Chromatin organization marks exon-intron structure
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
27 November 2018
The common colorectal cancer predisposition SNP rs6983267 at chromosome 8q24 confers potential to enhanced Wnt signaling.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
27 November 2018
Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
27 November 2018
Inference in Bayesian networks.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3321268
retrieved
27 November 2018
Identifiers
DOI
10.1038/NRG2795
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
754699
Dimensions Publication ID
1025284665
0 references
OpenCitations bibliographic resource ID
754699
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
754699
PMCID
3321268
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
754699
PubMed ID
20531367
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
754699
ResearchGate publication ID
44657069
0 references
Springer Nature article ID
10.1038/nrg2795
0 references
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