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Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
scientific article (publication date: March 2007)
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title
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
(English)
1 reference
stated in
PubMed
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17327847
retrieved
23 April 2017
main subject
mass spectrometry
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author name string
Elias JE
series ordinal
1
1 reference
stated in
PubMed
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17327847
retrieved
23 April 2017
Gygi SP
series ordinal
2
1 reference
stated in
PubMed
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17327847
retrieved
23 April 2017
language of work or name
English
1 reference
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PubMed
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17327847
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23 April 2017
publication date
March 2007
1 reference
stated in
PubMed
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17327847
retrieved
23 April 2017
published in
Nature Methods
1 reference
stated in
PubMed
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17327847
retrieved
23 April 2017
volume
4
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23 April 2017
page(s)
207-14
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17327847
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23 April 2017
issue
3
1 reference
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PubMed
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17327847
retrieved
23 April 2017
describes a project that uses
mass spectrometry
1 reference
based on heuristic
inferred from title
cites work
Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNMETH1019
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Integrated approach for manual evaluation of peptides identified by searching protein sequence databases with tandem mass spectra.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNMETH1019
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNMETH1019
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Qscore: an algorithm for evaluating SEQUEST database search results
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNMETH1019
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNMETH1019
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
PRISM, a generic large scale proteomic investigation strategy for mammals
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNMETH1019
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Optimization and use of peptide mass measurement accuracy in shotgun proteomics.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNMETH1019
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Probability-based protein identification by searching sequence databases using mass spectrometry data
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNMETH1019
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Trypsin cleaves exclusively C-terminal to arginine and lysine residues
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNMETH1019
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Improving protein identification using complementary fragmentation techniques in fourier transform mass spectrometry
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNMETH1019
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Improving reproducibility and sensitivity in identifying human proteins by shotgun proteomics
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNMETH1019
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNMETH1019
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Randomized sequence databases for tandem mass spectrometry peptide and protein identification.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNMETH1019
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Large-scale characterization of HeLa cell nuclear phosphoproteins
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNMETH1019
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Intensity-based protein identification by machine learning from a library of tandem mass spectra.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNMETH1019
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNMETH1019
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A hypergeometric probability model for protein identification and validation using tandem mass spectral data and protein sequence databases
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNMETH1019
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Interpretation of shotgun proteomic data: the protein inference problem
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNMETH1019
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A probability-based approach for high-throughput protein phosphorylation analysis and site localization
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNMETH1019
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Enhanced analysis of metastatic prostate cancer using stable isotopes and high mass accuracy instrumentation.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNMETH1019
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The International Protein Index: an integrated database for proteomics experiments
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNMETH1019
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1038/NMETH1019
2 references
stated in
PubMed
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17327847
retrieved
23 April 2017
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
253675
Dimensions Publication ID
1009487848
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OpenCitations bibliographic resource ID
253675
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
253675
PubMed ID
17327847
2 references
stated in
PubMed
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17327847
retrieved
23 April 2017
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
253675
ResearchGate publication ID
6478403
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Springer Nature article ID
10.1038/nmeth1019
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