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RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
scientific article (publication date: 4 August 2011)
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scholarly article
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review article
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Europe PubMed Central
title
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
(English)
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PubMed
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21816040
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23 April 2017
main subject
RNA sequencing
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based on heuristic
inferred from title
transcript quantification
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based on heuristic
inferred from title
RNA-Seq
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based on heuristic
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author name string
Li B
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23 April 2017
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23 April 2017
language of work or name
English
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23 April 2017
publication date
4 August 2011
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published in
BMC Bioinformatics
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volume
12
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23 April 2017
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323
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23 April 2017
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DESeq
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CZ Software Mentions: A large dataset of software mentions in the biomedical literature
edgeR
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edgeR
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CZ Software Mentions: A large dataset of software mentions in the biomedical literature
exact match
https://scigraph.springernature.com/pub.10.1186/1471-2105-12-323
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cites work
Full-length transcriptome assembly from RNA-Seq data without a reference genome
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163565
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23 April 2017
Ensembl 2011
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PubMed Central
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Differential expression analysis for sequence count data
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The UCSC Genome Browser database: update 2011
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PubMed Central
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23 April 2017
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
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PubMed Central
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23 April 2017
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23 April 2017
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163565
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23 April 2017
RNA-Seq: a revolutionary tool for transcriptomics
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163565
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23 April 2017
Alternative isoform regulation in human tissue transcriptomes
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163565
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23 April 2017
RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
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23 April 2017
Mapping and quantifying mammalian transcriptomes by RNA-Seq
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23 April 2017
The transcriptional landscape of the yeast genome defined by RNA sequencing
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23 April 2017
The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
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23 April 2017
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PubMed Central
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23 April 2017
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
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PubMed Central
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23 April 2017
Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
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23 April 2017
NCBI Reference Sequences: current status, policy and new initiatives
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23 April 2017
Improving RNA-Seq expression estimates by correcting for fragment bias
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PubMed Central
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3 June 2018
Inference of isoforms from short sequence reads
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3 June 2018
Isoform abundance inference provides a more accurate estimation of gene expression levels in RNA-seq
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PubMed Central
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3 June 2018
Analysis and design of RNA sequencing experiments for identifying isoform regulation
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163565
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3 June 2018
De novo assembly and analysis of RNA-seq data.
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3 June 2018
rQuant.web: a tool for RNA-Seq-based transcript quantitation
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3 June 2018
Modeling non-uniformity in short-read rates in RNA-Seq data
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163565
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3 June 2018
Detection of splice junctions from paired-end RNA-seq data by SpliceMap.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163565
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3 June 2018
Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163565
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3 June 2018
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3 June 2018
RNA-Seq gene expression estimation with read mapping uncertainty
1 reference
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3 June 2018
Statistical inferences for isoform expression in RNA-Seq
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163565
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3 June 2018
Optimal spliced alignments of short sequence reads
1 reference
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3 June 2018
Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing
1 reference
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3 June 2018
A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE.
1 reference
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3 June 2018
Identification of novel transcripts in annotated genomes using RNA-Seq.
1 reference
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26 November 2018
Accurate estimation of expression levels of homologous genes in RNA-seq experiments.
1 reference
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26 November 2018
Using non-uniform read distribution models to improve isoform expression inference in RNA-Seq.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3163565
retrieved
26 November 2018
Identifiers
DOI
10.1186/1471-2105-12-323
2 references
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PubMed
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21816040
retrieved
23 April 2017
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
170901
DBLP publication ID
journals/bmcbi/LiD11
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
Dimensions Publication ID
1021902674
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OpenCitations bibliographic resource ID
170901
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
170901
PMCID
3163565
2 references
stated in
PubMed
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21816040
retrieved
23 April 2017
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
170901
PubMed ID
21816040
2 references
stated in
PubMed
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21816040
retrieved
23 April 2017
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
170901
ResearchGate publication ID
51546641
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