(Q30002365)

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Mass Spectrometry of Human Leukocyte Antigen Class I Peptidomes Reveals Strong Effects of Protein Abundance and Turnover on Antigen Presentation

scientific article (publication date: 9 January 2015)

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scholarly article

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27 February 2020

Mass spectrometry of human leukocyte antigen class I peptidomes reveals strong effects of protein abundance and turnover on antigen presentation (English)

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27 February 2020

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Lars Juhl Jensen

3

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27 February 2020

Michal Bassani-Sternberg

1

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27 February 2020

Sune Pletscher-Frankild

2

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27 February 2020

author name string

Matthias Mann

4

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27 February 2020

publication date

9 January 2015

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27 February 2020

Molecular & Cellular Proteomics

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27 February 2020

14

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27 February 2020

658-673

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27 February 2020

3

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27 February 2020

describes a project that uses

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1 reference

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22 May 2017

Simultaneous alignment and clustering of peptide data using a Gibbs sampling approach

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1 reference

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22 May 2017

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

1 reference

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22 May 2017

Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips

1 reference

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22 May 2017

SYFPEITHI: database for MHC ligands and peptide motifs

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22 May 2017

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3 June 2018

Impact of genomic polymorphisms on the repertoire of human MHC class I-associated peptides

1 reference

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Expanding the detectable HLA peptide repertoire using electron-transfer/higher-energy collision dissociation (EThcD).

1 reference

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3 June 2018

Re-examining class-I presentation and the DRiP hypothesis

1 reference

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Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells

1 reference

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3 June 2018

Properties of MHC class I presented peptides that enhance immunogenicity

1 reference

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HLA ligandome tumor antigen discovery for personalized vaccine approach

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Central tolerance induction

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The repertoire of human tumor-associated epitopes--identification and selection of antigens and their application in clinical trials

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3 June 2018

The human leukocyte antigen-presented ligandome of B lymphocytes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4349985

3 June 2018

Kinetics of antigen expression and epitope presentation during virus infection.

1 reference

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3 June 2018

Positional bias of MHC class I restricted T-cell epitopes in viral antigens is likely due to a bias in conservation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4349985

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Personalized peptide vaccination: a new approach for advanced cancer as therapeutic cancer vaccine

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Next-generation peptide vaccines for advanced cancer

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1 reference

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3 June 2018

Proteome sampling by the HLA class I antigen processing pathway

1 reference

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3 June 2018

Origin and plasticity of MHC I-associated self peptides

1 reference

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3 June 2018

Towards a systems understanding of MHC class I and MHC class II antigen presentation.

1 reference

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The MHC I immunopeptidome conveys to the cell surface an integrative view of cellular regulation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4349985

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A quantitative spatial proteomics analysis of proteome turnover in human cells

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Major source of antigenic peptides for the MHC class I pathway is produced during the pioneer round of mRNA translation

1 reference

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Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer.

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Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones

1 reference

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Systematic characterisation of cellular localisation and expression profiles of proteins containing MHC ligands

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Pan-specific MHC class I predictors: a benchmark of HLA class I pan-specific prediction methods

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4349985

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NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11

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Analysis of nucleolar protein dynamics reveals the nuclear degradation of ribosomal proteins

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1074/MCP.M114.042812

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Consolidated OpenCitations Corpus – April 2017

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27 February 2020

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Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25576301%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25576301%20AND%20SRC:MED&resulttype=core&format=json

27 February 2020

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