(Q30051266)

English

Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods

scientific article published on November 11, 1992

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scholarly article

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Europe PubMed Central

14 November 2017

Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods (English)

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Europe PubMed Central

14 November 2017

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based on heuristic

inferred from title

nucleic acid tertiary structure

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Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1454539

28 September 2022

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R. R. Gutell

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28 September 2022

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A. Power

2

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28 September 2022

G. Z. Hertz

3

1 reference

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28 September 2022

E. J. Putz

4

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28 September 2022

G. D. Stormo

5

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28 September 2022

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publication date

1 November 1992

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14 November 2017

11 November 1992

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National Center for Biotechnology Information

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28 September 2022

full work available at URL

https://europepmc.org/articles/PMC334417

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Europe PubMed Central

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1454539

28 September 2022

https://europepmc.org/articles/PMC334417?pdf=render

Portable Document Format

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Europe PubMed Central

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Europe PubMed Central

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28 September 2022

Nucleic Acids Research

2 references

DOI.org query endpoint

https://doi.org/10.1093%2FNAR%2F20.21.5785

25 May 2017

Europe PubMed Central

14 November 2017

20

2 references

DOI.org query endpoint

https://doi.org/10.1093%2FNAR%2F20.21.5785

25 May 2017

Europe PubMed Central

14 November 2017

5785-5795

2 references

DOI.org query endpoint

https://doi.org/10.1093%2FNAR%2F20.21.5785

25 May 2017

Europe PubMed Central

14 November 2017

21

2 references

DOI.org query endpoint

https://doi.org/10.1093%2FNAR%2F20.21.5785

25 May 2017

Europe PubMed Central

14 November 2017

STRUCTURE OF A RIBONUCLEIC ACID

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Secondary structure model for 23S ribosomal RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Secondary structure comparisons between small subunit ribosomal RNA molecules from six different species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Secondary structure of the large subunit ribosomal RNA from Escherichia coli, Zea mays chloroplast, and human and mouse mitochondrial ribosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Primary and secondary structures of Escherichia coli MRE 600 23S ribosomal RNA. Comparison with models of secondary structure for maize chloroplast 23S rRNA and for large portions of mouse and human 16S mitochondrial rRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Secondary structure of 16S ribosomal RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Detailed molecular model for transfer ribonucleic acid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Serine Specific Transfer Ribonucleic Acids. XIV. Comparison of Nucleotide Sequences and Secondary Structure Models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Comparative anatomy of 16-S-like ribosomal RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Higher order structure in ribosomal RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Fidelity of secondary and tertiary interactions in tRNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Evolutionary relationships amongst archaebacteria. A comparative study of 23 S ribosomal RNAs of a sulphur-dependent extreme thermophile, an extreme halophile and a thermophilic methanogen

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Spliceosomal snRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Comparative and functional anatomy of group II catalytic introns--a review

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Additional Watson-Crick interactions suggest a structural core in large subunit ribosomal RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Solution structure of a tRNA with a large variable region: yeast tRNASer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Evidence for several higher order structural elements in ribosomal RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Structure and function of signal recognition particle RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Transfer RNA structure and coding specificity. II. A D-arm tertiary interaction that restricts coding range.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Phylogenetic evidence for tertiary interactions in 16S-like ribosomal RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

CUUCGG hairpins: extraordinarily stable RNA secondary structures associated with various biochemical processes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Higher order structural elements in ribosomal RNAs: pseudo-knots and the use of noncanonical pairs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Structure detection through automated covariance search.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops"

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Compilation of tRNA sequences and sequences of tRNA genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

The ribosomal RNA database project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Inferring consensus structure from nucleic acid sequences.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

A thermodynamic study of unusually stable RNA and DNA hairpins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Structural Elements in RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Structural Features that Give Rise to the Unusual Stability of RNA Hairpins Containing GNRA Loops

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

A functional pseudoknot in 16S ribosomal RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Phylogenetic analysis and evolution of RNase P RNA in proteobacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Solution structure of an unusually stable RNA hairpin, 5GGAC(UUCG)GUCC

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

A compilation of large subunit (23S-like) ribosomal RNA sequences presented in a secondary structure format

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Ribonuclease P: function and variation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Unusual resistance of peptidyl transferase to protein extraction procedures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

A compilation of large subunit (23S- and 23S-like) ribosomal RNA structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Structural domains of transfer RNA molecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Three-dimensional structure of transfer RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

3 June 2018

Changing the identity of a tRNA by introducing a G-U wobble pair near the 3' acceptor end.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334417

26 November 2018

The Ribosomal Database Project

1 reference

https://pubmed.ncbi.nlm.nih.gov/1454539

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recognition of tRNAs by aminoacyl-tRNA synthetases

1 reference

https://pubmed.ncbi.nlm.nih.gov/1454539

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Translation of the UGA triplet in vitro by tryptophan transfer RNA's

1 reference

https://pubmed.ncbi.nlm.nih.gov/1454539

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleotide Sequence Studies on Yeast Phenylalanine sRNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/1454539

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Translational efficiency of transfer RNA's: uses of an extended anticodon

1 reference

https://pubmed.ncbi.nlm.nih.gov/1454539

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

5S RNA secondary structure

1 reference

https://pubmed.ncbi.nlm.nih.gov/1454539

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

On the Nucleotide Sequence of Yeast Tyrosine Transfer RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/1454539

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

[Secondary and topographic structure of ribosomal RNA 16S of Escherichia coli]

1 reference

https://pubmed.ncbi.nlm.nih.gov/1454539

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/20.21.5785

2 references

DOI.org query endpoint

https://doi.org/10.1093%2FNAR%2F20.21.5785

25 May 2017

Europe PubMed Central

14 November 2017

1 reference

Europe PubMed Central

14 November 2017

1 reference

Europe PubMed Central

14 November 2017

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