(Q30053602)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22186715%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

title

PEAKS DB: de novo sequencing assisted database search for sensitive and accurate peptide identification (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22186715%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

0 references

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22186715%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

author name string

Jing Zhang

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22186715%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

Lei Xin

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22186715%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

Baozhen Shan

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22186715%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

Weiwu Chen

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22186715%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

Mingjie Xie

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22186715%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

Weiming Zhang

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22186715%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

Zefeng Zhang

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22186715%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

Gilles A Lajoie

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22186715%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

Bin Ma

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22186715%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

publication date

20 December 2011

2 references

25 May 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22186715%20AND%20SRC:MED&resulttype=core&format=json

Molecular & Cellular Proteomics

19 January 2020

published in

2 references

25 May 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22186715%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

volume

11

2 references

25 May 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22186715%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

page(s)

M111.010587

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22186715%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

issue

4

2 references

25 May 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22186715%20AND%20SRC:MED&resulttype=core&format=json

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

19 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322562

Andromeda: a peptide search engine integrated into the MaxQuant environment

26 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322562

Reanalysis of Tyrannosaurus rex Mass Spectra

26 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322562

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

26 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322562

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

26 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322562

Open mass spectrometry search algorithm

26 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322562

TANDEM: matching proteins with tandem mass spectra

26 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322562

PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry

26 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322562

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

26 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322562

Probability-based protein identification by searching sequence databases using mass spectrometry data

26 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322562

Comment on "Unbiased statistical analysis for multi-stage proteomic search strategies".

26 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322562

Protein abundances are more conserved than mRNA abundances across diverse taxa

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322562

The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322562

Better score function for peptide identification with ETD MS/MS spectra

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322562

A HUPO test sample study reveals common problems in mass spectrometry-based proteomics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322562

Accurate and sensitive peptide identification with Mascot Percolator

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322562

Assigning significance to peptides identified by tandem mass spectrometry using decoy databases

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322562

NovoHMM: a hidden Markov model for de novo peptide sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322562

An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322562

Comprehensive analysis of a multidimensional liquid chromatography mass spectrometry dataset acquired on a quadrupole selecting, quadrupole collision cell, time-of-flight mass spectrometer: II. New developments in Protein Prospector allow for reliab

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322562

PepNovo: de novo peptide sequencing via probabilistic network modeling

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322562

Sequence database searches via de novo peptide sequencing by tandem mass spectrometry

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3322562

Improved peptide identification for proteomic analysis based on comprehensive characterization of electron transfer dissociation spectra

3 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1074%2FMCP.M111.010587

Unbiased statistical analysis for multi-stage proteomic search strategies

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22186715

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/MCP.M111.010587

3 references

25 May 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22186715%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22186715%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

2 references