(Q30157331)

English

One membrane protein, two structures and six environments: a comparative molecular dynamics simulation study of the bacterial outer membrane protein PagP.

scientific article

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scholarly article

1 reference

Europe PubMed Central

8 June 2017

One membrane protein, two structures and six environments: a comparative molecular dynamics simulation study of the bacterial outer membrane protein PagP. (English)

1 reference

Europe PubMed Central

8 June 2017

molecular dynamics simulation

0 references

membrane proteins

1 reference

based on heuristic

inferred from title

author name string

Katherine Cox

1

1 reference

Europe PubMed Central

8 June 2017

Mark S P Sansom

2

1 reference

Europe PubMed Central

8 June 2017

publication date

10 March 2009

1 reference

Europe PubMed Central

8 June 2017

Molecular Membrane Biology

1 reference

Europe PubMed Central

8 June 2017

26

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Europe PubMed Central

8 June 2017

205-214

1 reference

Europe PubMed Central

8 June 2017

4

1 reference

Europe PubMed Central

8 June 2017

Structure and function of bacterial outer membrane proteins: barrels in a nutshell

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Structural biology of membrane-intrinsic beta-barrel enzymes: sentinels of the bacterial outer membrane

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Outer membrane protein A of E. coli folds into detergent micelles, but not in the presence of monomeric detergent

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Folding and insertion of the outer membrane protein OmpA is assisted by the chaperone Skp and by lipopolysaccharide

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Folding kinetics of the outer membrane proteins OmpA and FomA into phospholipid bilayers

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Membrane elastic fluctuations and the insertion and tilt of beta-barrel proteins

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Curvature elasticity and refolding of OmpA in large unilamellar vesicles

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Folding and assembly of beta-barrel membrane proteins

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Electrostatic couplings in OmpA ion-channel gating suggest a mechanism for pore opening

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Role of aromatic side chains in the folding and thermodynamic stability of integral membrane proteins

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Incorporation of outer membrane protein OmpG in lipid membranes: protein-lipid interactions and beta-barrel orientation

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Beta-barrel proteins that reside in the Escherichia coli outer membrane in vivo demonstrate varied folding behavior in vitro

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

A hydrocarbon ruler measures palmitate in the enzymatic acylation of endotoxin

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Solution structure and dynamics of the outer membrane enzyme PagP by NMR.

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Lipid A acylation and bacterial resistance against vertebrate antimicrobial peptides.

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

3-O-deacylation of lipid A by PagL, a PhoP/PhoQ-regulated deacylase of Salmonella typhimurium, modulates signaling through Toll-like receptor 4.

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

The integral membrane enzyme PagP alternates between two dynamically distinct states

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

The lipid A palmitoyltransferase PagP: molecular mechanisms and role in bacterial pathogenesis

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

The N-terminal helix is a post-assembly clamp in the bacterial outer membrane protein PagP.

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Computer simulations of membrane proteins

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Membrane proteins: molecular dynamics simulations.

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Comparative protein modelling by satisfaction of spatial restraints

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Modeling of loops in protein structures

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

WHAT IF: a molecular modeling and drug design program

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Setting up and optimization of membrane protein simulations.

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Membrane protein dynamics versus environment: simulations of OmpA in a micelle and in a bilayer.

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

VMD: visual molecular dynamics

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

RASMOL: biomolecular graphics for all

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

The simulation approach to bacterial outer membrane proteins.

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Outer membrane proteins: comparing X-ray and NMR structures by MD simulations in lipid bilayers.

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

OmpA: gating and dynamics via molecular dynamics simulations

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Lipid-protein interactions of integral membrane proteins: a comparative simulation study

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

How proteins adapt to a membrane-water interface

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

A study of the membrane-water interface region of membrane proteins.

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Coarse-grained MD simulations of membrane protein-bilayer self-assembly.

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Orientation of beta-barrel proteins OmpA and FhuA in lipid membranes. Chain length dependence from infrared dichroism

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Molecular structure of the outer bacterial membrane of Pseudomonas aeruginosa via classical simulation

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

GROMACS 3.0: a package for molecular simulation and trajectory analysis

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Molecular dynamics with coupling to an external bath

1 reference

https://api.crossref.org/works/10.1080%2F09687680902788967

21 January 2018

Identifiers

10.1080/09687680902788967

1 reference

Europe PubMed Central

8 June 2017

1 reference

Europe PubMed Central

8 June 2017

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